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133
HACKING
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@ -2,141 +2,20 @@
#+TITLE: Hacking GNU Guix and Its Incredible Distro #+TITLE: Hacking GNU Guix and Its Incredible Distro
Copyright © 2012, 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org> Copyright © 2012, 2013, 2014 Ludovic Courtès <ludo@gnu.org>
Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org> Copyright © 2015 Mathieu Lirzin <mthl@openmailbox.org>
Copyright © 2014 Pierre-Antoine Rault <par@rigelk.eu>
Copying and distribution of this file, with or without modification, Copying and distribution of this file, with or without modification,
are permitted in any medium without royalty provided the copyright are permitted in any medium without royalty provided the copyright
notice and this notice are preserved. notice and this notice are preserved.
* Contributing
* Building from Git See the manual for useful hacking informations, either by running
When building Guix from a checkout, the following packages are required in info -f doc/guix.info "(guix) Contributing"
addition to those mentioned in the installation instructions:
- [[http://www.gnu.org/software/autoconf/][GNU Autoconf]] or by checking the [[http://www.gnu.org/software/guix/manual/guix.html#Contributing][web copy of the manual]].
- [[http://www.gnu.org/software/automake/][GNU Automake]]
- [[http://www.gnu.org/software/gettext/][GNU Gettext]]
- [[http://www.graphviz.org/][Graphviz]]
- [[http://www.gnu.org/software/help2man/][GNU Help2man]] (optional)
Run ‘./bootstrap’ to download the Nix daemon source code and to generate the
build system infrastructure using autoconf. It reports an error if an
inappropriate version of the above packages is being used.
If you get an error like this one:
configure.ac:46: error: possibly undefined macro: PKG_CHECK_MODULES
it probably means that Autoconf couldn’t find ‘pkg.m4’, which is provided by
pkg-config. Make sure that ‘pkg.m4’ is available. For instance, if you
installed Automake in ‘/usr/local’, it wouldn’t look for ‘.m4’ files in
‘/usr/share’. So you have to invoke the following command in that case
$ export ACLOCAL_PATH=/usr/share/aclocal
See “info '(automake) Macro Search Path'” for more information.
Then, run ‘./configure’ as usual.
Finally, you have to invoke ‘make check’ to run tests. If anything fails,
take a look at “info '(guix) Installation'” or send a message to
<guix-devel@gnu.org>.
* Running Guix before it is installed
See the same-named section in the manual.
* The Perfect Setup
The Perfect Setup to hack on Guix is basically the perfect setup used
for Guile hacking (info "(guile) Using Guile in Emacs"). First, you
need more than an editor, you need [[http://www.gnu.org/software/emacs][Emacs]], empowered by the wonderful
[[http://nongnu.org/geiser/][Geiser]].
Geiser allows for interactive and incremental development from within
Emacs: code compilation and evaluation from within buffers, access to
on-line documentation (docstrings), context-sensitive completion, M-. to
jump to an object definition, a REPL to try out your code, and more.
To actually edit the code, Emacs already has a neat Scheme mode. But in
addition to that, you must not miss [[http://www.emacswiki.org/emacs/ParEdit][Paredit]]. It provides facilities to
directly operate on the syntax tree, such as raising an s-expression or
wrapping it, swallowing or rejecting the following s-expression, etc.
* Submitting Patches
Development is done using the Git distributed version control system. Thus,
access to the repository is not strictly necessary. We welcome contributions
in the form of patches as produced by ‘git format-patch’ sent to
guix-devel@gnu.org. Please write commit logs in the [[http://www.gnu.org/prep/standards/html_node/Change-Logs.html#Change-Logs][GNU ChangeLog
format]]; you can check the commit history for examples.
Before submitting a patch that adds or modifies a package definition, please
run ‘guix lint PACKAGE’, where PACKAGE is the name of the new or modified
package, and fix any errors it reports. In addition, please make sure the
package builds on your platform, using ‘guix build’. You may also want to
check that dependent package (if applicable) are not affected by the change;
‘guix refresh --list-dependent PACKAGE’ will help you do that.
When posting a patch to the mailing list, use "[PATCH] ..." as a subject. You
may use your email client or the ‘git send-mail’ command.
As you become a regular contributor, you may find it convenient to have write
access to the repository (see below.)
* Coding Style
In general our code follows the [[info:standards][GNU Coding Standards]] (GCS). However, the GCS
do not say much about Scheme, so here are some additional rules.
** Programming Paradigm
Scheme code in Guix is written in a purely functional style. One exception is
code that involves input/output, and procedures that implement low-level
concepts, such as the ‘memoize’ procedure.
** Modules
Guile modules that are meant to be used on the builder side must live in the
(guix build …) name space. They must not refer to other Guix or GNU modules.
However, it is OK for a “host-side” module to use a build-side module.
Modules that deal with the broader GNU system should be in the (gnu …) name
space rather than (guix …).
** Data Types and Pattern Matching
The tendency in classical Lisp is to use lists to represent everything, and
then to browse them “by hand” using ‘car’, ‘cdr’, ‘cadr’, and co. There are
several problems with that style, notably the fact that it is hard to read,
error-prone, and a hindrance to proper type error reports.
Guix code should define appropriate data types (for instance, using
‘define-record-type*’) rather than abuse lists. In addition, it should use
pattern matching, via Guile’s (ice-9 match) module, especially when matching
lists.
** Formatting Code
When writing Scheme code, we follow common wisdom among Scheme programmers.
In general, we follow the [[http://mumble.net/~campbell/scheme/style.txt][Riastradh's Lisp Style Rules]]. This document happens
to describe the conventions mostly used in Guile’s code too. It is very
thoughtful and well written, so please do read it.
Some special forms introduced in Guix, such as the ‘substitute*’ macro, have
special indentation rules. These are defined in the .dir-locals.el file,
which Emacs automatically uses. If you do not use Emacs, please make sure to
let your editor know the rules.
We require all top-level procedures to carry a docstring. This requirement
can be relaxed for simple private procedures in the (guix build …) name space,
though.
Procedures should not have more than four positional parameters. Use keyword
parameters for procedures that take more than four parameters.
* Commit Access * Commit Access

4
README
View file

@ -46,8 +46,8 @@ See the manual for the installation instructions, either by running
or by checking the [[http://www.gnu.org/software/guix/manual/guix.html#Installation][web copy of the manual]]. or by checking the [[http://www.gnu.org/software/guix/manual/guix.html#Installation][web copy of the manual]].
For information on installation from a Git checkout, please see the ‘HACKING’ For information on installation from a Git checkout, please see the section
file. "Building from Git" in the manual.
* Installing Guix from Guix * Installing Guix from Guix

2
configure.ac
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@ -179,7 +179,7 @@ AC_CACHE_SAVE
m4_include([config-daemon.ac]) m4_include([config-daemon.ac])
dnl `dot' (from the Graphviz package) is only needed for maintainers. dnl `dot' (from the Graphviz package) is only needed for maintainers.
dnl See `HACKING' for more info. dnl See `Building from Git' in the manual for more info.
AM_MISSING_PROG([DOT], [dot]) AM_MISSING_PROG([DOT], [dot])
dnl Manual pages. dnl Manual pages.

1
doc.am
View file

@ -19,6 +19,7 @@
info_TEXINFOS = doc/guix.texi info_TEXINFOS = doc/guix.texi
EXTRA_DIST += \ EXTRA_DIST += \
doc/contributing.texi \
doc/emacs.texi \ doc/emacs.texi \
doc/fdl-1.3.texi \ doc/fdl-1.3.texi \
doc/images/bootstrap-graph.dot \ doc/images/bootstrap-graph.dot \

216
doc/contributing.texi Normal file
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@ -0,0 +1,216 @@
@node Contributing
@chapter Contributing
This project is a cooperative effort, and we need your help to make it
grow! Please get in touch with us on @email{guix-devel@@gnu.org} and
@code{#guix} on the Freenode IRC network. We welcome ideas, bug
reports, patches, and anything that may be helpful to the project. We
particularly welcome help on packaging (@pxref{Packaging Guidelines}).
@menu
* Building from Git:: The latest and greatest.
* Running Guix Before It Is Installed:: Hacker tricks.
* The Perfect Setup:: The right tools.
* Coding Style:: Hygiene of the contributor.
* Submitting Patches:: Share your work.
@end menu
@node Building from Git
@section Building from Git
If you want to hack Guix itself, it is recommended to use the latest
version from the Git repository. When building Guix from a checkout,
the following packages are required in addition to those mentioned in
the installation instructions (@pxref{Requirements}).
@itemize
@item @url{http://gnu.org/software/autoconf/, GNU Autoconf};
@item @url{http://gnu.org/software/automake/, GNU Automake};
@item @url{http://gnu.org/software/gettext/, GNU Gettext};
@item @url{http://www.graphviz.org/, Graphviz};
@item @url{http://www.gnu.org/software/help2man/, GNU Help2man (optional)}.
@end itemize
Run @command{./bootstrap} to download the Nix daemon source code and to
generate the build system infrastructure using autoconf. It reports an
error if an inappropriate version of the above packages is being used.
@noindent
If you get an error like this one:
@example
configure.ac:46: error: possibly undefined macro: PKG_CHECK_MODULES
@end example
it probably means that Autoconf couldn’t find @file{pkg.m4}, which is
provided by @command{pkg-config}. Make sure that @file{pkg.m4} is
available. For instance, if you installed Automake in
@file{/usr/local}, it wouldn’t look for @file{.m4} files in
@file{/usr/share}. So you have to invoke the following command in that
case
@example
export ACLOCAL_PATH=/usr/share/aclocal
@end example
See @pxref{Macro Search Path,,, automake, The GNU Automake Manual} for
more information.
Then, run @command{./configure} as usual.
Finally, you have to invoke @code{make check} to run tests. If anything
fails, take a look at installation instructions (@pxref{Installation})
or send a message to the @email{guix-devel@@gnu.org, mailing list}.
@node Running Guix Before It Is Installed
@section Running Guix Before It Is Installed
In order to keep a sane working environment, you will find it useful to
test the changes made in your local source tree checkout without
actually installing them. So that you can distinguish between your
``end-user'' hat and your ``motley'' costume.
To that end, all the command-line tools can be used even if you have not
run @code{make install}. To do that, prefix each command with
@command{./pre-inst-env} (the @file{pre-inst-env} script lives in the
top build tree of Guix), as in:
@example
$ sudo ./pre-inst-env guix-daemon --build-users-group=guixbuild
$ ./pre-inst-env guix build hello
@end example
@noindent
Similarly, for a Guile session using the Guix modules:
@example
$ ./pre-inst-env guile -c '(use-modules (guix utils)) (pk (%current-system))'
@end example
The @command{pre-inst-env} script sets up all the environment variables
necessary to support this, including @env{PATH} and @env{GUILE_LOAD_PATH}.
@node The Perfect Setup
@section The Perfect Setup
The Perfect Setup to hack on Guix is basically the perfect setup used
for Guile hacking (@pxref{Using Guile in Emacs,,, guile, Guile Reference
Manual}). First, you need more than an editor, you need
@url{http://www.gnu.org/software/emacs, Emacs}, empowered by the
wonderful @url{http://nongnu.org/geiser/, Geiser}.
Geiser allows for interactive and incremental development from within
Emacs: code compilation and evaluation from within buffers, access to
on-line documentation (docstrings), context-sensitive completion,
@kbd{M-.} to jump to an object definition, a REPL to try out your code,
and more (@pxref{Introduction,,, geiser, Geiser User Manual}). For
convenient Guix development, make sure to augment Guile’s load path so
that it finds source files from your checkout:
@lisp
;; @r{Assuming the Guix checkout is in ~/src/guix.}
(add-to-list 'geiser-guile-load-path "~/src/guix")
@end lisp
To actually edit the code, Emacs already has a neat Scheme mode. But in
addition to that, you must not miss
@url{http://www.emacswiki.org/emacs/ParEdit, Paredit}. It provides
facilities to directly operate on the syntax tree, such as raising an
s-expression or wrapping it, swallowing or rejecting the following
s-expression, etc.
@node Coding Style
@section Coding Style
In general our code follows the GNU Coding Standards (@pxref{Top,,,
standards, GNU Coding Standards}). However, they do not say much about
Scheme, so here are some additional rules.
@menu
* Programming Paradigm:: How to compose your elements.
* Modules:: Where to store your code?
* Data Types and Pattern Matching:: Implementing data structures.
* Formatting Code:: Writing conventions.
@end menu
@node Programming Paradigm
@subsection Programming Paradigm
Scheme code in Guix is written in a purely functional style. One
exception is code that involves input/output, and procedures that
implement low-level concepts, such as the @code{memoize} procedure.
@node Modules
@subsection Modules
Guile modules that are meant to be used on the builder side must live in
the @code{(guix build @dots{})} name space. They must not refer to
other Guix or GNU modules. However, it is OK for a ``host-side'' module
to use a build-side module.
Modules that deal with the broader GNU system should be in the
@code{(gnu @dots{})} name space rather than @code{(guix @dots{})}.
@node Data Types and Pattern Matching
@subsection Data Types and Pattern Matching
The tendency in classical Lisp is to use lists to represent everything,
and then to browse them ``by hand'' using @code{car}, @code{cdr},
@code{cadr}, and co. There are several problems with that style,
notably the fact that it is hard to read, error-prone, and a hindrance
to proper type error reports.
Guix code should define appropriate data types (for instance, using
@code{define-record-type*}) rather than abuse lists. In addition, it
should use pattern matching, via Guile’s @code{(ice-9 match)} module,
especially when matching lists.
@node Formatting Code
@subsection Formatting Code
When writing Scheme code, we follow common wisdom among Scheme
programmers. In general, we follow the
@url{http://mumble.net/~campbell/scheme/style.txt, Riastradh's Lisp
Style Rules}. This document happens to describe the conventions mostly
used in Guile’s code too. It is very thoughtful and well written, so
please do read it.
Some special forms introduced in Guix, such as the @code{substitute*}
macro, have special indentation rules. These are defined in the
@file{.dir-locals.el} file, which Emacs automatically uses. If you do
not use Emacs, please make sure to let your editor know the rules.
We require all top-level procedures to carry a docstring. This
requirement can be relaxed for simple private procedures in the
@code{(guix build @dots{})} name space, though.
Procedures should not have more than four positional parameters. Use
keyword parameters for procedures that take more than four parameters.
@node Submitting Patches
@section Submitting Patches
Development is done using the Git distributed version control system.
Thus, access to the repository is not strictly necessary. We welcome
contributions in the form of patches as produced by @code{git
format-patch} sent to the @email{guix-devel@@gnu.org, mailing list}.
Please write commit logs in the ChangeLog format (@pxref{Change Logs,,,
standards, GNU Coding Standards}); you can check the commit history for
examples.
Before submitting a patch that adds or modifies a package definition,
please run @code{guix lint @var{package}}, where @var{package} is the
name of the new or modified package, and fix any errors it reports
(@pxref{Invoking guix lint}). In addition, please make sure the package
builds on your platform, using @code{guix build @var{package}}. You may
also want to check that dependent package (if applicable) are not
affected by the change; @code{guix refresh --list-dependent
@var{package}} will help you do that (@pxref{Invoking guix refresh}).
When posting a patch to the mailing list, use @samp{[PATCH] @dots{}} as a
subject. You may use your email client or the @command{git send-mail}
command.

80
doc/guix.texi
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@ -13,6 +13,8 @@
Copyright @copyright{} 2012, 2013, 2014, 2015 Ludovic Courtès@* Copyright @copyright{} 2012, 2013, 2014, 2015 Ludovic Courtès@*
Copyright @copyright{} 2013, 2014 Andreas Enge@* Copyright @copyright{} 2013, 2014 Andreas Enge@*
Copyright @copyright{} 2013 Nikita Karetnikov@* Copyright @copyright{} 2013 Nikita Karetnikov@*
Copyright @copyright{} 2015 Mathieu Lirzin@*
Copyright @copyright{} 2014 Pierre-Antoine Rault@*
Copyright @copyright{} 2015 Taylan Ulrich Bayırlı/Kammer Copyright @copyright{} 2015 Taylan Ulrich Bayırlı/Kammer
Permission is granted to copy, distribute and/or modify this document Permission is granted to copy, distribute and/or modify this document
@ -88,7 +90,6 @@ Installation
* Running the Test Suite:: Testing Guix. * Running the Test Suite:: Testing Guix.
* Setting Up the Daemon:: Preparing the build daemon's environment. * Setting Up the Daemon:: Preparing the build daemon's environment.
* Invoking guix-daemon:: Running the build daemon. * Invoking guix-daemon:: Running the build daemon.
* Running Guix Before It Is Installed:: Hacker tricks.
Setting Up the Daemon Setting Up the Daemon
@ -177,6 +178,21 @@ Packaging Guidelines
* Perl Modules:: Little pearls. * Perl Modules:: Little pearls.
* Fonts:: Fond of fonts. * Fonts:: Fond of fonts.
Contributing
* Building from Git:: The latest and greatest.
* Running Guix Before It Is Installed:: Hacker tricks.
* The Perfect Setup:: The right tools.
* Coding Style:: Hygiene of the contributor.
* Submitting Patches:: Share your work.
Coding Style
* Programming Paradigm:: How to compose your elements.
* Modules:: Where to store your code?
* Data Types and Pattern Matching:: Implementing data structures.
* Formatting Code:: Writing conventions.
@end detailmenu @end detailmenu
@end menu @end menu
@ -253,7 +269,6 @@ instead, you want to install the complete GNU operating system,
* Running the Test Suite:: Testing Guix. * Running the Test Suite:: Testing Guix.
* Setting Up the Daemon:: Preparing the build daemon's environment. * Setting Up the Daemon:: Preparing the build daemon's environment.
* Invoking guix-daemon:: Running the build daemon. * Invoking guix-daemon:: Running the build daemon.
* Running Guix Before It Is Installed:: Hacker tricks.
@end menu @end menu
@node Binary Installation @node Binary Installation
@ -847,44 +862,6 @@ useful in exceptional circumstances, such as if you need to run several
daemons on the same machine. daemons on the same machine.
@end table @end table
@node Running Guix Before It Is Installed
@section Running Guix Before It Is Installed
If you are hacking Guix itself---which is a good idea!---you will find
it useful to test the changes made in your local source tree checkout
without actually installing them.
To that end, all the command-line tools can be used even if you have not
run @command{make install}. To do that, prefix each command with
@command{./pre-inst-env} (the @file{pre-inst-env} script lives in the
top build tree of Guix), as in:
@example
$ sudo ./pre-inst-env guix-daemon --build-users-group=guixbuild
$ ./pre-inst-env guix build hello
@end example
@noindent
Similarly, for a Guile session using the Guix modules:
@example
$ ./pre-inst-env guile -c '(use-modules (guix utils)) (pk (%current-system))'
@end example
The @command{pre-inst-env} script sets up all the environment variables
necessary to support this, including @code{PATH} and
@code{GUILE_LOAD_PATH}.
If you are hacking Guix from Emacs using the wonderful Geiser
(@pxref{Introduction,,, geiser, Geiser User Manual}), make sure to
augment Guile's load path so that it finds source files from your
checkout:
@lisp
;; Assuming the Guix checkout is in ~/src/guix.
(add-to-list 'geiser-guile-load-path "~/src/guix")
@end lisp
@c ********************************************************************* @c *********************************************************************
@node Package Management @node Package Management
@ -3438,6 +3415,13 @@ candidates:
guix build guile --with-source=../guile-2.0.9.219-e1bb7.tar.xz guix build guile --with-source=../guile-2.0.9.219-e1bb7.tar.xz
@end example @end example
@dots{} or to build from a checkout in a pristine environment:
@example
$ git clone git://git.sv.gnu.org/guix.git
$ guix build guix --with-source=./guix
@end example
@item --no-grafts @item --no-grafts
Do not ``graft'' packages. In practice, this means that package updates Do not ``graft'' packages. In practice, this means that package updates
available as grafts are not applied. @xref{Security Updates}, for more available as grafts are not applied. @xref{Security Updates}, for more
@ -6781,22 +6765,8 @@ Second, some of the required packages could fail to build for that
platform. Lastly, the generated binaries could be broken for some platform. Lastly, the generated binaries could be broken for some
reason. reason.
@c ********************************************************************* @c *********************************************************************
@node Contributing @include contributing.texi
@chapter Contributing
This project is a cooperative effort, and we need your help to make it
grow! Please get in touch with us on @email{guix-devel@@gnu.org} and
@code{#guix} on the Freenode IRC network. We welcome ideas, bug
reports, patches, and anything that may be helpful to the project. We
particularly welcome help on packaging (@pxref{Packaging Guidelines}).
Please see the
@url{http://git.savannah.gnu.org/cgit/guix.git/tree/HACKING,
@file{HACKING} file} that comes with the Guix source code for practical
details about contributions.
@c ********************************************************************* @c *********************************************************************
@node Acknowledgments @node Acknowledgments

6
gnu-system.am
View file

@ -59,6 +59,7 @@ GNU_SYSTEM_MODULES = \
gnu/packages/cdrom.scm \ gnu/packages/cdrom.scm \
gnu/packages/certs.scm \ gnu/packages/certs.scm \
gnu/packages/check.scm \ gnu/packages/check.scm \
gnu/packages/ci.scm \
gnu/packages/cmake.scm \ gnu/packages/cmake.scm \
gnu/packages/code.scm \ gnu/packages/code.scm \
gnu/packages/commencement.scm \ gnu/packages/commencement.scm \
@ -196,6 +197,7 @@ GNU_SYSTEM_MODULES = \
gnu/packages/lxqt.scm \ gnu/packages/lxqt.scm \
gnu/packages/lynx.scm \ gnu/packages/lynx.scm \
gnu/packages/m4.scm \ gnu/packages/m4.scm \
gnu/packages/machine-learning.scm \
gnu/packages/man.scm \ gnu/packages/man.scm \
gnu/packages/mail.scm \ gnu/packages/mail.scm \
gnu/packages/make-bootstrap.scm \ gnu/packages/make-bootstrap.scm \
@ -454,6 +456,8 @@ dist_patch_DATA = \
gnu/packages/patches/gtkglext-disable-disable-deprecated.patch \ gnu/packages/patches/gtkglext-disable-disable-deprecated.patch \
gnu/packages/patches/hop-bigloo-4.0b.patch \ gnu/packages/patches/hop-bigloo-4.0b.patch \
gnu/packages/patches/hop-linker-flags.patch \ gnu/packages/patches/hop-linker-flags.patch \
gnu/packages/patches/hydra-automake-1.15.patch \
gnu/packages/patches/hydra-disable-darcs-test.patch \
gnu/packages/patches/irrlicht-mesa-10.patch \ gnu/packages/patches/irrlicht-mesa-10.patch \
gnu/packages/patches/jbig2dec-ignore-testtest.patch \ gnu/packages/patches/jbig2dec-ignore-testtest.patch \
gnu/packages/patches/kmod-module-directory.patch \ gnu/packages/patches/kmod-module-directory.patch \
@ -510,6 +514,7 @@ dist_patch_DATA = \
gnu/packages/patches/perl-gd-options-passthrough-and-fontconfig.patch \ gnu/packages/patches/perl-gd-options-passthrough-and-fontconfig.patch \
gnu/packages/patches/perl-module-pluggable-search.patch \ gnu/packages/patches/perl-module-pluggable-search.patch \
gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch \ gnu/packages/patches/perl-net-amazon-s3-moose-warning.patch \
gnu/packages/patches/perl-net-ssleay-disable-ede-test.patch \
gnu/packages/patches/perl-no-sys-dirs.patch \ gnu/packages/patches/perl-no-sys-dirs.patch \
gnu/packages/patches/perl-tk-x11-discover.patch \ gnu/packages/patches/perl-tk-x11-discover.patch \
gnu/packages/patches/petsc-fix-threadcomm.patch \ gnu/packages/patches/petsc-fix-threadcomm.patch \
@ -524,6 +529,7 @@ dist_patch_DATA = \
gnu/packages/patches/pybugz-encode-error.patch \ gnu/packages/patches/pybugz-encode-error.patch \
gnu/packages/patches/pybugz-stty.patch \ gnu/packages/patches/pybugz-stty.patch \
gnu/packages/patches/pyqt-configure.patch \ gnu/packages/patches/pyqt-configure.patch \
gnu/packages/patches/python-disable-ssl-test.patch \
gnu/packages/patches/python-fix-tests.patch \ gnu/packages/patches/python-fix-tests.patch \
gnu/packages/patches/python-libffi-mips-n32-fix.patch \ gnu/packages/patches/python-libffi-mips-n32-fix.patch \
gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch \ gnu/packages/patches/python2-rdflib-drop-sparqlwrapper.patch \

4
gnu/packages/admin.scm
View file

@ -152,14 +152,14 @@ (define-public pies
(define-public inetutils (define-public inetutils
(package (package
(name "inetutils") (name "inetutils")
(version "1.9.3") (version "1.9.4")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "mirror://gnu/inetutils/inetutils-" (uri (string-append "mirror://gnu/inetutils/inetutils-"
version ".tar.gz")) version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"06dshajjpyi9sxi7qfki9gnp5r3nxvyvf81r81gx0x2qkqzqcxlj")))) "05n65k4ixl85dc6rxc51b1b732gnmm8xnqi424dy9f1nz7ppb3xy"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments `(;; FIXME: `tftp.sh' relies on `netstat' from utils-linux, (arguments `(;; FIXME: `tftp.sh' relies on `netstat' from utils-linux,
;; which is currently missing. ;; which is currently missing.

51
gnu/packages/audio.scm
View file

@ -1031,6 +1031,57 @@ (define-public rubberband
tempo and pitch of an audio recording independently of one another.") tempo and pitch of an audio recording independently of one another.")
(license license:gpl2+))) (license license:gpl2+)))
(define-public rtmidi
(package
(name "rtmidi")
(version "2.1.0")
(source (origin
(method url-fetch)
(uri
(string-append "https://github.com/powertab/rtmidi/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0d49lapnmdgmjxh4vw57h6xk74nn5r0zwysv7jbd7m8kqhpq5rjj"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ;no "check" target
#:phases (modify-phases %standard-phases
(add-before
'configure 'autoconf
(lambda _ (zero? (system* "autoreconf" "-vfi"))))
(add-before
'build 'fix-makefile
(lambda _
(substitute* "Makefile"
(("/bin/ln") "ln")
(("RtMidi.h RtError.h") "RtMidi.h"))
#t))
(add-before
'install 'make-target-dirs
(lambda _
(let ((out (assoc-ref %outputs "out")))
(mkdir-p (string-append out "/bin"))
(mkdir (string-append out "/lib"))
(mkdir (string-append out "/include")))
#t)))))
(inputs
`(("jack" ,jack-1)
("alsa-lib" ,alsa-lib)))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
("libtool" ,libtool)
("pkg-config" ,pkg-config)))
(home-page "https://github.com/powertab/rtmidi")
(synopsis "Cross-platform MIDI library for C++")
(description
"RtMidi is a set of C++ classes (RtMidiIn, RtMidiOut, and API specific
classes) that provide a common cross-platform API for realtime MIDI
input/output.")
(license license:expat)))
(define-public sratom (define-public sratom
(package (package
(name "sratom") (name "sratom")

1
gnu/packages/autotools.scm
View file

@ -95,7 +95,6 @@ (define* (autoconf-wrapper #:optional (autoconf autoconf))
only be used internally---users should not end up distributing `configure' only be used internally---users should not end up distributing `configure'
files with a system-specific shebang." files with a system-specific shebang."
(package (inherit autoconf) (package (inherit autoconf)
(location (source-properties->location (current-source-location)))
(name (string-append (package-name autoconf) "-wrapper")) (name (string-append (package-name autoconf) "-wrapper"))
(build-system trivial-build-system) (build-system trivial-build-system)
(inputs `(("guile" (inputs `(("guile"

110
gnu/packages/bioinformatics.scm
View file

@ -34,6 +34,7 @@ (define-module (gnu packages bioinformatics)
#:use-module (gnu packages file) #:use-module (gnu packages file)
#:use-module (gnu packages java) #:use-module (gnu packages java)
#:use-module (gnu packages linux) #:use-module (gnu packages linux)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages maths) #:use-module (gnu packages maths)
#:use-module (gnu packages ncurses) #:use-module (gnu packages ncurses)
#:use-module (gnu packages perl) #:use-module (gnu packages perl)
@ -438,6 +439,76 @@ (define-public clipper
"CLIPper is a tool to define peaks in CLIP-seq datasets.") "CLIPper is a tool to define peaks in CLIP-seq datasets.")
(license license:gpl2))) (license license:gpl2)))
(define-public couger
(package
(name "couger")
(version "1.8.2")
(source (origin
(method url-fetch)
(uri (string-append
"http://couger.oit.duke.edu/static/assets/COUGER"
version ".zip"))
(sha256
(base32
"04p2b14nmhzxw5h72mpzdhalv21bx4w9b87z0wpw0xzxpysyncmq"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f
#:phases
(modify-phases %standard-phases
(delete 'configure)
(delete 'build)
(replace
'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(copy-recursively "src" (string-append out "/src"))
(mkdir (string-append out "/bin"))
;; Add "src" directory to module lookup path.
(substitute* "couger"
(("from argparse")
(string-append "import sys\nsys.path.append(\""
out "\")\nfrom argparse")))
(copy-file "couger" (string-append out "/bin/couger")))
#t))
(add-after
'install 'wrap-program
(lambda* (#:key inputs outputs #:allow-other-keys)
;; Make sure 'couger' runs with the correct PYTHONPATH.
(let* ((out (assoc-ref outputs "out"))
(path (getenv "PYTHONPATH")))
(wrap-program (string-append out "/bin/couger")
`("PYTHONPATH" ":" prefix (,path))))
#t)))))
(inputs
`(("python" ,python-2)
("python2-pillow" ,python2-pillow)
("python2-numpy" ,python2-numpy)
("python2-scipy" ,python2-scipy)
("python2-matplotlib" ,python2-matplotlib)))
(propagated-inputs
`(("r" ,r)
("libsvm" ,libsvm)
("randomjungle" ,randomjungle)))
(native-inputs
`(("unzip" ,unzip)))
(home-page "http://couger.oit.duke.edu")
(synopsis "Identify co-factors in sets of genomic regions")
(description
"COUGER can be applied to any two sets of genomic regions bound by
paralogous TFs (e.g., regions derived from ChIP-seq experiments) to identify
putative co-factors that provide specificity to each TF. The framework
determines the genomic targets uniquely-bound by each TF, and identifies a
small set of co-factors that best explain the in vivo binding differences
between the two TFs.
COUGER uses classification algorithms (support vector machines and random
forests) with features that reflect the DNA binding specificities of putative
co-factors. The features are generated either from high-throughput TF-DNA
binding data (from protein binding microarray experiments), or from large
collections of DNA motifs.")
(license license:gpl3+)))
(define-public clustal-omega (define-public clustal-omega
(package (package
(name "clustal-omega") (name "clustal-omega")
@ -1030,6 +1101,27 @@ (define-public miso
that a read originated from a particular isoform.") that a read originated from a particular isoform.")
(license license:gpl2))) (license license:gpl2)))
(define-public orfm
(package
(name "orfm")
(version "0.3.2")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/wwood/OrfM/releases/download/v"
version "/orfm-" version ".tar.gz"))
(sha256
(base32
"00jqvlspj9662ni9r4n1snxfnwkzc02i46g5nk1kwjshi6v3vgg3"))))
(build-system gnu-build-system)
(inputs `(("zlib" ,zlib)))
(synopsis "Simple and not slow open reading frame (ORF) caller")
(description
"An ORF caller finds stretches of DNA that when translated are not
interrupted by stop codons. OrfM finds and prints these ORFs.")
(home-page "https://github.com/wwood/OrfM")
(license license:lgpl3+)))
(define-public python2-pbcore (define-public python2-pbcore
(package (package
(name "python2-pbcore") (name "python2-pbcore")
@ -1331,7 +1423,7 @@ (define-public samtools-0.1
(define-public ngs-sdk (define-public ngs-sdk
(package (package
(name "ngs-sdk") (name "ngs-sdk")
(version "1.1.0") (version "1.1.1")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
@ -1341,7 +1433,7 @@ (define-public ngs-sdk
(file-name (string-append name "-" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"09fakv9w87lfg9g70kwzmnryqdjj1sz2c7kw01i6drjf787gkjhw")))) "1x58gpm574n0xmk2a98gmikbgycq78ia0bvnb42k5ck34fmd5v8y"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:parallel-build? #f ; not supported `(#:parallel-build? #f ; not supported
@ -1351,20 +1443,6 @@ (define-public ngs-sdk
'configure 'configure
(lambda* (#:key outputs #:allow-other-keys) (lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out"))) (let ((out (assoc-ref outputs "out")))
;; Only replace the version suffix, not the version number in the
;; directory name; fixed in commit 46d4509fa8 (no release yet).
(substitute* "setup/konfigure.perl"
(((string-append "\\$\\(subst "
"(\\$\\(VERSION[^\\)]*\\)),"
"(\\$\\([^\\)]+\\)),"
"(\\$\\([^\\)]+\\)|\\$\\@)"
"\\)")
_ pattern replacement target)
(string-append "$(patsubst "
"%" pattern ","
"%" replacement ","
target ")")))
;; The 'configure' script doesn't recognize things like ;; The 'configure' script doesn't recognize things like
;; '--enable-fast-install'. ;; '--enable-fast-install'.
(zero? (system* "./configure" (zero? (system* "./configure"

9
gnu/packages/check.scm
View file

@ -113,18 +113,17 @@ (define-public cppunit
(define-public catch-framework (define-public catch-framework
(package (package
(name "catch") (name "catch")
(version "1.0.53") ;Sub-minor is the build number (version "1.1.3") ;Sub-minor is the build number
(source (origin (source (origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
(url "https://github.com/philsquared/Catch") (url "https://github.com/philsquared/Catch")
;; Semi-arbitrary. Contains mostly documentation fixes ;; Semi-arbitrary.
;; since build 53. (commit "c51e86819d")))
(commit "b9ec8a1")))
(file-name (string-append name "-" version)) (file-name (string-append name "-" version))
(sha256 (sha256
(base32 (base32
"05iijiwjwcjbza7qamwd32d0jypi0lpywmilmmj2xh280mcl4dbd")))) "0kgi7wxxysgjbpisqfj4dj0k19cyyai92f001zi8gzkybd4fkgv5"))))
(build-system trivial-build-system) (build-system trivial-build-system)
(arguments (arguments
`(#:modules ((guix build utils)) `(#:modules ((guix build utils))

182
gnu/packages/ci.scm Normal file
View file

@ -0,0 +1,182 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages ci)
#:use-module ((guix licenses) #:prefix l:)
#:use-module (gnu packages)
#:use-module (guix packages)
#:use-module (guix git-download)
#:use-module (gnu packages autotools)
#:use-module (gnu packages base)
#:use-module (gnu packages docbook)
#:use-module (gnu packages compression)
#:use-module (gnu packages databases)
#:use-module (gnu packages guile)
#:use-module (gnu packages mail)
#:use-module (gnu packages openssl)
#:use-module (gnu packages package-management)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages version-control)
#:use-module (gnu packages web)
#:use-module (gnu packages xml)
#:use-module (gnu packages zip)
#:use-module (guix build-system gnu))
(define-public hydra
(let ((commit "4c0e3e4"))
(package
(name "hydra")
(version (string-append "20150407." commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/NixOS/hydra")
(commit commit)))
(file-name (string-append name "-" version))
(sha256
(base32
"08vc76xb7f42hh65j7qvjf58hw36aki5ml343170pq94vk75b1nh"))
(patches (map search-patch
'("hydra-automake-1.15.patch"
;; TODO: Remove once we have a darcs input
"hydra-disable-darcs-test.patch")))))
(build-system gnu-build-system)
(native-inputs
`(("unzip" ,unzip)
("pkg-config" ,pkg-config)
;; For documentation
("dblatex" ,dblatex)
("xsltproc" ,libxslt)
("docbook-xsl" ,docbook-xsl)
;; For bootstrap
("autoconf" ,autoconf)
("automake" ,automake)
("libtool" ,libtool)
;; For tests
("git" ,git)
("subversion" ,subversion)
("mercurial" ,mercurial)
("bazaar" ,bazaar)))
(inputs
`(("perl" ,perl)
("guile" ,guile-2.0)
("openssl" ,openssl)
("bzip2" ,bzip2)
("gzip" ,gzip)
("sed" ,sed)
("starman" ,starman)
("git" ,git)
("subversion" ,subversion)
("mercurial" ,mercurial)
("bazaar" ,bazaar)
("nix" ,nix)
;; Lots o' perl modules...
("perl-catalyst-action-rest" ,perl-catalyst-action-rest)
("perl-catalyst-authentication-store-dbix-class"
,perl-catalyst-authentication-store-dbix-class)
("perl-catalyst-devel" ,perl-catalyst-devel)
("perl-catalyst-dispatchtype-regex" ,perl-catalyst-dispatchtype-regex)
("perl-catalyst-plugin-accesslog" ,perl-catalyst-plugin-accesslog)
("perl-catalyst-plugin-authorization-roles"
,perl-catalyst-plugin-authorization-roles)
("perl-catalyst-plugin-captcha" ,perl-catalyst-plugin-captcha)
("perl-catalyst-plugin-session-state-cookie"
,perl-catalyst-plugin-session-state-cookie)
("perl-catalyst-plugin-session-store-fastmmap"
,perl-catalyst-plugin-session-store-fastmmap)
("perl-catalyst-plugin-stacktrace" ,perl-catalyst-plugin-stacktrace)
("perl-catalyst-traitfor-request-proxybase"
,perl-catalyst-traitfor-request-proxybase)
("perl-catalyst-view-download" ,perl-catalyst-view-download)
("perl-catalyst-view-json" ,perl-catalyst-view-json)
("perl-catalyst-view-tt" ,perl-catalyst-view-tt)
("perl-catalystx-roleapplicator" ,perl-catalystx-roleapplicator)
("perl-catalystx-script-server-starman"
,perl-catalystx-script-server-starman)
("perl-crypt-randpasswd" ,perl-crypt-randpasswd)
("perl-data-dump" ,perl-data-dump)
("perl-datetime" ,perl-datetime)
("perl-dbd-pg" ,perl-dbd-pg)
("perl-dbd-sqlite" ,perl-dbd-sqlite)
("perl-digest-sha1" ,perl-digest-sha1)
("perl-email-mime" ,perl-email-mime)
("perl-email-sender" ,perl-email-sender)
("perl-file-slurp" ,perl-file-slurp)
("perl-io-compress" ,perl-io-compress)
("perl-ipc-run" ,perl-ipc-run)
("perl-json-any" ,perl-json-any)
("perl-json-xs" ,perl-json-xs)
("perl-libwww" ,perl-libwww)
("perl-lwp-protocol-https" ,perl-lwp-protocol-https)
("perl-net-amazon-s3" ,perl-net-amazon-s3)
("perl-padwalker" ,perl-padwalker)
("perl-readonly" ,perl-readonly)
("perl-set-scalar" ,perl-set-scalar)
("perl-sql-splitstatement" ,perl-sql-splitstatement)
("perl-sys-hostname-long" ,perl-sys-hostname-long)
("perl-text-diff" ,perl-text-diff)
("perl-text-table" ,perl-text-table)
("perl-xml-simple" ,perl-xml-simple)))
(arguments
`(#:configure-flags
(let ((docbook (assoc-ref %build-inputs "docbook-xsl")))
(list (string-append "--with-docbook-xsl="
docbook "/xml/xsl/docbook-xsl-"
,(package-version docbook-xsl))
(string-append "--docdir=" %output
"/doc/hydra-" ,version)))
#:phases (modify-phases %standard-phases
(add-after
'unpack 'bootstrap
(lambda _ (zero? (system* "autoreconf" "-vfi"))))
(add-before
'check 'check-setup
(lambda _ (setenv "LOGNAME" "test.log")))
(add-after
'install 'wrap-program
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(for-each
(lambda (file)
(wrap-program file
`("PATH" ":" prefix
(,(string-append out "/bin")
,@(map (lambda (i)
(string-append (assoc-ref inputs i)
"/bin"))
'("subversion" "git" "bazaar"
"mercurial" "coreutils" "gzip"
"sed" "unzip" "nix"))))
`("PERL5LIB" ":" prefix
(,(string-append out "/libexec/hydra/lib")
,@(search-path-as-string->list
(getenv "PERL5LIB"))))
`("HYDRA_RELEASE" = (,,version))
`("HYDRA_HOME" =
(,(string-append out "/libexec/hydra")))
`("NIX_RELEASE" = (,,(package-version nix)))))
(find-files (string-append out "/bin")
".*"))))))))
(home-page "https://nixos.org/hydra")
(synopsis "Continuous build system")
(description
"Hydra is a tool for continuous integration testing and software
release that uses a purely functional language to describe build jobs and
their dependencies.")
(license l:gpl3+))))

64
gnu/packages/code.scm
View file

@ -1,6 +1,7 @@
;;; GNU Guix --- Functional package management for GNU ;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2013, 2015 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2013, 2015 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;; ;;;
;;; This file is part of GNU Guix. ;;; This file is part of GNU Guix.
;;; ;;;
@ -22,9 +23,12 @@ (define-module (gnu packages code)
#:use-module (guix download) #:use-module (guix download)
#:use-module ((guix licenses) #:prefix license:) #:use-module ((guix licenses) #:prefix license:)
#:use-module (guix build-system gnu) #:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
#:use-module (gnu packages base)
#:use-module (gnu packages compression) #:use-module (gnu packages compression)
#:use-module (gnu packages databases) #:use-module (gnu packages databases)
#:use-module (gnu packages emacs) #:use-module (gnu packages emacs)
#:use-module (gnu packages gcc)
#:use-module (gnu packages pcre) #:use-module (gnu packages pcre)
#:use-module (gnu packages pkg-config) #:use-module (gnu packages pkg-config)
#:use-module (gnu packages perl) #:use-module (gnu packages perl)
@ -225,3 +229,63 @@ (define-public the-silver-searcher
files, but compared to grep is much faster and respects files like .gitignore, files, but compared to grep is much faster and respects files like .gitignore,
.hgignore, etc.") .hgignore, etc.")
(license license:asl2.0))) (license license:asl2.0)))
(define-public withershins
(package
(name "withershins")
(version "0.1")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/cameronwhite/withershins/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"08z3lyvswx7sad10637vfpwglbcbgzzcpfihw0x8lzr74f3b70bh"))))
(build-system cmake-build-system)
(arguments
`(#:out-of-source? #f
#:modules ((guix build utils)
(guix build cmake-build-system)
(ice-9 popen)
(ice-9 rdelim))
#:phases
(modify-phases %standard-phases
(add-after
'unpack 'find-libiberty
(lambda _
(let ((plugin (let* ((port (open-input-pipe
"gcc -print-file-name=plugin"))
(str (read-line port)))
(close-pipe port)
str)))
(substitute* "cmake/FindIberty.cmake"
(("/usr/include") (string-append plugin "/include"))
(("libiberty.a iberty") (string-append "NAMES libiberty.a iberty\nPATHS \""
(assoc-ref %build-inputs "gcc")
"/lib" "\"")))
#t)))
(replace
'install
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
(mkdir-p (string-append out "/lib"))
(mkdir (string-append out "/include"))
(copy-file "src/withershins.hpp"
(string-append out "/include/withershins.hpp"))
(copy-file "src/libwithershins.a"
(string-append out "/lib/libwithershins.a")))
#t)))))
(home-page "https://github.com/cameronwhite/withershins")
(inputs
`(("gcc" ,gcc-4.8 "lib") ;for libiberty.a
("binutils" ,binutils) ;for libbfd
("zlib" ,zlib)))
(synopsis "C++11 library for generating stack traces")
(description
"Withershins is a simple cross-platform C++11 library for generating
stack traces.")
;; Sources are released under Expat license, but since BFD is licensed
;; under the GPLv3+ the combined work is GPLv3+ as well.
(license license:gpl3+)))

3
gnu/packages/commencement.scm
View file

@ -65,7 +65,6 @@ (define gnu-make-boot0
(package-with-bootstrap-guile (package-with-bootstrap-guile
(package (inherit gnu-make) (package (inherit gnu-make)
(name "make-boot0") (name "make-boot0")
(location (source-properties->location (current-source-location)))
(arguments (arguments
`(#:guile ,%bootstrap-guile `(#:guile ,%bootstrap-guile
#:implicit-inputs? #f #:implicit-inputs? #f
@ -93,7 +92,6 @@ (define diffutils-boot0
,@%bootstrap-inputs) ,@%bootstrap-inputs)
#:guile %bootstrap-guile))) #:guile %bootstrap-guile)))
(package (inherit p) (package (inherit p)
(location (source-properties->location (current-source-location)))
(arguments `(#:tests? #f ; the test suite needs diffutils (arguments `(#:tests? #f ; the test suite needs diffutils
,@(package-arguments p))))))) ,@(package-arguments p)))))))
@ -552,7 +550,6 @@ (define-public gcc-final
;; The final GCC. ;; The final GCC.
(package (inherit gcc-boot0) (package (inherit gcc-boot0)
(name "gcc") (name "gcc")
(location (source-properties->location (current-source-location)))
;; XXX: Currently #:allowed-references applies to all the outputs but the ;; XXX: Currently #:allowed-references applies to all the outputs but the
;; "debug" output contains disallowed references, notably ;; "debug" output contains disallowed references, notably

1
gnu/packages/cross-base.scm
View file

@ -38,7 +38,6 @@ (define-module (gnu packages cross-base)
(define (cross p target) (define (cross p target)
(package (inherit p) (package (inherit p)
(location (source-properties->location (current-source-location)))
(name (string-append (package-name p) "-cross-" target)) (name (string-append (package-name p) "-cross-" target))
(arguments (arguments
(substitute-keyword-arguments (package-arguments p) (substitute-keyword-arguments (package-arguments p)

2
gnu/packages/emacs.scm
View file

@ -123,7 +123,6 @@ (define-public emacs-no-x
;; This is the version that you should use as an input to packages that just ;; This is the version that you should use as an input to packages that just
;; need to byte-compile .el files. ;; need to byte-compile .el files.
(package (inherit emacs) (package (inherit emacs)
(location (source-properties->location (current-source-location)))
(name "emacs-no-x") (name "emacs-no-x")
(synopsis "The extensible, customizable, self-documenting text (synopsis "The extensible, customizable, self-documenting text
editor (console only)") editor (console only)")
@ -138,7 +137,6 @@ (define-public emacs-no-x
(define-public emacs-no-x-toolkit (define-public emacs-no-x-toolkit
(package (inherit emacs) (package (inherit emacs)
(location (source-properties->location (current-source-location)))
(name "emacs-no-x-toolkit") (name "emacs-no-x-toolkit")
(synopsis "The extensible, customizable, self-documenting text (synopsis "The extensible, customizable, self-documenting text
editor (without an X toolkit)" ) editor (without an X toolkit)" )

34
gnu/packages/gnome.scm
View file

@ -1854,6 +1854,40 @@ (define-public glib-networking
library.") library.")
(license license:lgpl2.0+))) (license license:lgpl2.0+)))
(define-public librest
(package
(name "librest")
(version "0.7.93")
(source (origin
(method url-fetch)
(uri (string-append "mirror://gnome/sources/rest/"
(version-major+minor version) "/"
"rest-" version ".tar.xz"))
(sha256
(base32
"05mj10hhiik23ai8w4wkk5vhsp7hcv24bih5q3fl82ilam268467"))))
(build-system gnu-build-system)
(arguments
'(#:tests? #f ; tests require internet connection
#:configure-flags
'("--with-ca-certificates=/etc/ssl/certs/ca-certificates.crt")))
(native-inputs
`(("glib-mkenums" ,glib "bin")
("gobject-introspection" ,gobject-introspection)
("pkg-config" ,pkg-config)))
(propagated-inputs
;; rest-0.7.pc refers to all these.
`(("glib" ,glib)
("libsoup" ,libsoup)
("libxml2" ,libxml2)))
(home-page "http://www.gtk.org/")
(synopsis "RESTful web api query library")
(description
"This library was designed to make it easier to access web services that
claim to be \"RESTful\". It includes convenience wrappers for libsoup and
libxml to ease remote use of the RESTful API.")
(license license:lgpl2.1+)))
(define-public libsoup (define-public libsoup
(package (package
(name "libsoup") (name "libsoup")

4
gnu/packages/gnupg.scm
View file

@ -190,14 +190,14 @@ (define-public npth
(define-public gnupg (define-public gnupg
(package (package
(name "gnupg") (name "gnupg")
(version "2.1.4") (version "2.1.5")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "mirror://gnupg/gnupg/gnupg-" version (uri (string-append "mirror://gnupg/gnupg/gnupg-" version
".tar.bz2")) ".tar.bz2"))
(sha256 (sha256
(base32 (base32
"1c3c89b7ziknz6h1dnwmfjhgyy28g982rcncrhmhylb8v3npw4k4")))) "0k5818r847zplbrwjp6i48s6xb5zy44rny2kmbisd6y3c1qml45m"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(inputs (inputs
`(("bzip2" ,bzip2) `(("bzip2" ,bzip2)

6
gnu/packages/haskell.scm
View file

@ -144,7 +144,7 @@ (define-public ghc
(ghc-bootstrap-prefix (ghc-bootstrap-prefix
(string-append ghc-bootstrap-path "/usr" ))) (string-append ghc-bootstrap-path "/usr" )))
(alist-cons-after (alist-cons-after
'unpack-bin 'unpack-and-fix-testsuite 'unpack-bin 'unpack-testsuite-and-fix-bins
(lambda* (#:key inputs outputs #:allow-other-keys) (lambda* (#:key inputs outputs #:allow-other-keys)
(with-directory-excursion ".." (with-directory-excursion ".."
(copy-file (assoc-ref inputs "ghc-testsuite") (copy-file (assoc-ref inputs "ghc-testsuite")
@ -155,7 +155,9 @@ (define-public ghc
"testsuite/timeout/timeout.py" "testsuite/timeout/timeout.py"
"testsuite/timeout/timeout.hs" "testsuite/timeout/timeout.hs"
"testsuite/tests/rename/prog006/Setup.lhs" "testsuite/tests/rename/prog006/Setup.lhs"
"testsuite/tests/programs/life_space_leak/life.test") "testsuite/tests/programs/life_space_leak/life.test"
"libraries/process/System/Process/Internals.hs"
"libraries/unix/cbits/execvpe.c")
(("/bin/sh") (which "sh")) (("/bin/sh") (which "sh"))
(("/bin/rm") "rm")) (("/bin/rm") "rm"))
#t) #t)

71
gnu/packages/java.scm
View file

@ -610,6 +610,9 @@ (define-public icedtea7
(modules '((guix build utils))) (modules '((guix build utils)))
(snippet (snippet
'(substitute* "Makefile.in" '(substitute* "Makefile.in"
;; link against libgcj to avoid linker error
(("-o native-ecj")
"-lgcj -o native-ecj")
;; do not leak information about the build host ;; do not leak information about the build host
(("DISTRIBUTION_ID=\"\\$\\(DIST_ID\\)\"") (("DISTRIBUTION_ID=\"\\$\\(DIST_ID\\)\"")
"DISTRIBUTION_ID=\"\\\"guix\\\"\""))))) "DISTRIBUTION_ID=\"\\\"guix\\\"\"")))))
@ -627,15 +630,7 @@ (define-public icedtea7
#:locale "C" #:locale "C"
,@(substitute-keyword-arguments (package-arguments icedtea6) ,@(substitute-keyword-arguments (package-arguments icedtea6)
((#:configure-flags flags) ((#:configure-flags flags)
`(let ((jdk (assoc-ref %build-inputs "icedtea6")) `(delete "--with-openjdk-src-dir=./openjdk" ,flags))
(ant (assoc-ref %build-inputs "ant")))
`("--disable-bootstrap"
"--without-rhino"
"--enable-nss"
"--enable-system-lcms"
"--disable-downloading"
,(string-append "--with-ant-home=" ant)
,(string-append "--with-jdk-home=" jdk))))
((#:phases phases) ((#:phases phases)
`(modify-phases ,phases `(modify-phases ,phases
(replace (replace
@ -677,30 +672,37 @@ (define-public icedtea7
(replace (replace
'set-additional-paths 'set-additional-paths
(lambda* (#:key inputs #:allow-other-keys) (lambda* (#:key inputs #:allow-other-keys)
(substitute* "openjdk/jdk/make/common/shared/Sanity.gmk" (let (;; Get target-specific include directory so that
(("ALSA_INCLUDE=/usr/include/alsa/version.h") ;; libgcj-config.h is found when compiling hotspot.
(string-append "ALSA_INCLUDE=" (gcjinclude (let* ((port (open-input-pipe "gcj -print-file-name=include"))
(assoc-ref inputs "alsa-lib") (str (read-line port)))
"/include/alsa/version.h"))) (close-pipe port)
(setenv "CC" "gcc") str)))
(setenv "CPATH" (substitute* "openjdk/jdk/make/common/shared/Sanity.gmk"
(string-append (assoc-ref inputs "libxrender") (("ALSA_INCLUDE=/usr/include/alsa/version.h")
"/include/X11/extensions" ":" (string-append "ALSA_INCLUDE="
(assoc-ref inputs "libxtst") (assoc-ref inputs "alsa-lib")
"/include/X11/extensions" ":" "/include/alsa/version.h")))
(assoc-ref inputs "libxinerama") (setenv "CC" "gcc")
"/include/X11/extensions" ":" (setenv "CPATH"
(or (getenv "CPATH") ""))) (string-append gcjinclude ":"
(setenv "ALT_OBJCOPY" (which "objcopy")) (assoc-ref inputs "libxrender")
(setenv "ALT_CUPS_HEADERS_PATH" "/include/X11/extensions" ":"
(string-append (assoc-ref inputs "cups") (assoc-ref inputs "libxtst")
"/include")) "/include/X11/extensions" ":"
(setenv "ALT_FREETYPE_HEADERS_PATH" (assoc-ref inputs "libxinerama")
(string-append (assoc-ref inputs "freetype") "/include/X11/extensions" ":"
"/include")) (or (getenv "CPATH") "")))
(setenv "ALT_FREETYPE_LIB_PATH" (setenv "ALT_OBJCOPY" (which "objcopy"))
(string-append (assoc-ref inputs "freetype") (setenv "ALT_CUPS_HEADERS_PATH"
"/lib")))) (string-append (assoc-ref inputs "cups")
"/include"))
(setenv "ALT_FREETYPE_HEADERS_PATH"
(string-append (assoc-ref inputs "freetype")
"/include"))
(setenv "ALT_FREETYPE_LIB_PATH"
(string-append (assoc-ref inputs "freetype")
"/lib")))))
(add-after (add-after
'unpack 'fix-x11-extension-include-path 'unpack 'fix-x11-extension-include-path
(lambda* (#:key inputs #:allow-other-keys) (lambda* (#:key inputs #:allow-other-keys)
@ -733,7 +735,6 @@ (define-public icedtea7
(delete 'patch-patches)))))) (delete 'patch-patches))))))
(native-inputs (native-inputs
`(("ant" ,ant) `(("ant" ,ant)
("icedtea6" ,icedtea6 "jdk")
("openjdk-drop" ("openjdk-drop"
,(drop "openjdk" ,(drop "openjdk"
"03gxqn17cxwl1nspnwigacaqd28p02d45f396j5f4kkbzfnbl0ak")) "03gxqn17cxwl1nspnwigacaqd28p02d45f396j5f4kkbzfnbl0ak"))
@ -756,4 +757,4 @@ (define-public icedtea7
,(drop "hotspot" ,(drop "hotspot"
"1yqxfd2jwbm5y41wscyfx8h0fr3h8ny2g2mda5iwd8sikxsaj96p")) "1yqxfd2jwbm5y41wscyfx8h0fr3h8ny2g2mda5iwd8sikxsaj96p"))
,@(fold alist-delete (package-native-inputs icedtea6) ,@(fold alist-delete (package-native-inputs icedtea6)
'("openjdk6-src" "ant-bootstrap" "gcj"))))))) '("openjdk6-src" "ant-bootstrap")))))))

146
gnu/packages/machine-learning.scm Normal file
View file

@ -0,0 +1,146 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;;
;;; This file is part of GNU Guix.
;;;
;;; GNU Guix is free software; you can redistribute it and/or modify it
;;; under the terms of the GNU General Public License as published by
;;; the Free Software Foundation; either version 3 of the License, or (at
;;; your option) any later version.
;;;
;;; GNU Guix is distributed in the hope that it will be useful, but
;;; WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages machine-learning)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix utils)
#:use-module (guix download)
#:use-module (guix build-system gnu)
#:use-module (gnu packages)
#:use-module (gnu packages boost)
#:use-module (gnu packages compression)
#:use-module (gnu packages gcc)
#:use-module (gnu packages maths)
#:use-module (gnu packages python)
#:use-module (gnu packages xml))
(define-public libsvm
(package
(name "libsvm")
(version "3.20")
(source
(origin
(method url-fetch)
(uri (string-append
"https://github.com/cjlin1/libsvm/archive/v"
(string-delete #\. version) ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1jpjlql3frjza7zxzrqqr2firh44fjb8fqsdmvz6bjz7sb47zgp4"))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ;no "check" target
#:phases (modify-phases %standard-phases
(delete 'configure)
(replace
'install
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin/")))
(mkdir-p bin)
(for-each (lambda (file)
(copy-file file (string-append bin file)))
'("svm-train"
"svm-predict"
"svm-scale")))
#t)))))
(home-page "http://www.csie.ntu.edu.tw/~cjlin/libsvm/")
(synopsis "Library for Support Vector Machines")
(description
"LIBSVM is a machine learning library for support vector
classification, (C-SVC, nu-SVC), regression (epsilon-SVR, nu-SVR) and
distribution estimation (one-class SVM). It supports multi-class
classification.")
(license license:bsd-3)))
(define-public python-libsvm
(package (inherit libsvm)
(name "python-libsvm")
(build-system gnu-build-system)
(arguments
`(#:tests? #f ;no "check" target
#:make-flags '("-C" "python")
#:phases
(modify-phases %standard-phases
(delete 'configure)
(replace
'install
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((site (string-append (assoc-ref outputs "out")
"/lib/python"
(string-take
(string-take-right
(assoc-ref inputs "python") 5) 3)
"/site-packages/")))
(substitute* "python/svm.py"
(("../libsvm.so.2") "libsvm.so.2"))
(mkdir-p site)
(for-each (lambda (file)
(copy-file file (string-append site (basename file))))
(find-files "python" "\\.py"))
(copy-file "libsvm.so.2"
(string-append site "libsvm.so.2")))
#t)))))
(inputs
`(("python" ,python)))
(synopsis "Python bindings of libSVM")))
(define-public randomjungle
(package
(name "randomjungle")
(version "2.1.0")
(source
(origin
(method url-fetch)
(uri (string-append
"http://www.imbs-luebeck.de/imbs/sites/default/files/u59/"
"randomjungle-" version ".tar_.gz"))
(sha256
(base32
"12c8rf30cla71swx2mf4ww9mfd8jbdw5lnxd7dxhyw1ygrvg6y4w"))))
(build-system gnu-build-system)
(arguments
`(#:configure-flags
(list (string-append "--with-boost="
(assoc-ref %build-inputs "boost")))
#:phases
(modify-phases %standard-phases
(add-before
'configure 'set-CXXFLAGS
(lambda _
(setenv "CXXFLAGS" "-fpermissive ")
#t)))))
(inputs
`(("boost" ,boost)
("gsl" ,gsl)
("libxml2" ,libxml2)
("zlib" ,zlib)))
(native-inputs
`(("gfortran" ,gfortran-4.8)))
(home-page "http://www.imbs-luebeck.de/imbs/de/node/227/")
(synopsis "Implementation of the Random Forests machine learning method")
(description
"Random Jungle is an implementation of Random Forests. It is supposed to
analyse high dimensional data. In genetics, it can be used for analysing big
Genome Wide Association (GWA) data. Random Forests is a powerful machine
learning method. Most interesting features are variable selection, missing
value imputation, classifier creation, generalization error estimation and
sample proximities between pairs of cases.")
(license license:gpl3+)))

1
gnu/packages/make-bootstrap.scm
View file

@ -601,7 +601,6 @@ (define %guile-static-stripped
(define (tarball-package pkg) (define (tarball-package pkg)
"Return a package containing a tarball of PKG." "Return a package containing a tarball of PKG."
(package (inherit pkg) (package (inherit pkg)
(location (source-properties->location (current-source-location)))
(name (string-append (package-name pkg) "-tarball")) (name (string-append (package-name pkg) "-tarball"))
(build-system trivial-build-system) (build-system trivial-build-system)
(native-inputs `(("tar" ,tar) (native-inputs `(("tar" ,tar)

1
gnu/packages/maths.scm
View file

@ -560,7 +560,6 @@ (define-public petsc
(define-public petsc-complex (define-public petsc-complex
(package (inherit petsc) (package (inherit petsc)
(location (source-properties->location (current-source-location)))
(name "petsc-complex") (name "petsc-complex")
(arguments (arguments
(substitute-keyword-arguments (package-arguments petsc) (substitute-keyword-arguments (package-arguments petsc)

98
gnu/packages/music.scm
View file

@ -22,9 +22,15 @@ (define-module (gnu packages music)
#:use-module (guix download) #:use-module (guix download)
#:use-module ((guix licenses) #:prefix license:) #:use-module ((guix licenses) #:prefix license:)
#:use-module (guix build-system gnu) #:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
#:use-module (gnu packages) #:use-module (gnu packages)
#:use-module (gnu packages audio) #:use-module (gnu packages audio)
#:use-module (gnu packages base) ;libbdf
#:use-module (gnu packages boost)
#:use-module (gnu packages bison) #:use-module (gnu packages bison)
#:use-module (gnu packages code)
#:use-module (gnu packages check)
#:use-module (gnu packages compression)
#:use-module (gnu packages docbook) #:use-module (gnu packages docbook)
#:use-module (gnu packages flex) #:use-module (gnu packages flex)
#:use-module (gnu packages fonts) #:use-module (gnu packages fonts)
@ -45,9 +51,11 @@ (define-module (gnu packages music)
#:use-module (gnu packages perl) #:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config) #:use-module (gnu packages pkg-config)
#:use-module (gnu packages python) #:use-module (gnu packages python)
#:use-module (gnu packages qt)
#:use-module (gnu packages rsync) #:use-module (gnu packages rsync)
#:use-module (gnu packages texinfo) #:use-module (gnu packages texinfo)
#:use-module (gnu packages texlive) #:use-module (gnu packages texlive)
#:use-module (gnu packages web)
#:use-module (gnu packages xml) #:use-module (gnu packages xml)
#:use-module (gnu packages xiph) #:use-module (gnu packages xiph)
#:use-module (gnu packages zip)) #:use-module (gnu packages zip))
@ -224,6 +232,96 @@ (define-public solfege
your own lessons.") your own lessons.")
(license license:gpl3+))) (license license:gpl3+)))
(define-public powertabeditor
(package
(name "powertabeditor")
(version "2.0.0-alpha7")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/powertab/powertabeditor/archive/"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1yp6ck2r72c2pfq31z1kpw1j639rndrifj85l3cbj2kdf8rdzhkk"))
(modules '((guix build utils)))
(snippet
'(begin
;; Remove bundled sources for external libraries
(delete-file-recursively "external")
(substitute* "CMakeLists.txt"
(("include_directories\\(\\$\\{PROJECT_SOURCE_DIR\\}/external/.*") "")
;; TODO: tests cannot be built:
;; test/test_main.cpp:28:12: error: ‘Session’ is not a member of ‘Catch’
(("add_subdirectory\\(test\\)") "")
(("add_subdirectory\\(external\\)") ""))
(substitute* "test/CMakeLists.txt"
(("include_directories\\(\\$\\{PROJECT_SOURCE_DIR\\}/external/.*") ""))
;; Add install target
(substitute* "source/CMakeLists.txt"
(("qt5_use_modules")
(string-append
"install(TARGETS powertabeditor "
"RUNTIME DESTINATION ${CMAKE_INSTALL_PREFIX}/bin)\n"
"install(FILES data/tunings.json DESTINATION "
"${CMAKE_INSTALL_PREFIX}/share/powertabeditor/)\n"
"qt5_use_modules")))
#t))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f ; no "check" target
#:modules ((guix build cmake-build-system)
(guix build utils)
(ice-9 match))
#:configure-flags
;; CMake appears to lose the RUNPATH for some reason, so it has to be
;; explicitly set with CMAKE_INSTALL_RPATH.
(list (string-append "-DCMAKE_INSTALL_RPATH="
(string-join (map (match-lambda
((name . directory)
(string-append directory "/lib")))
%build-inputs) ";")))
#:phases
(modify-phases %standard-phases
(add-before
'configure 'remove-third-party-libs
(lambda* (#:key inputs #:allow-other-keys)
;; Link with required static libraries, because we're not
;; using the bundled version of withershins.
(substitute* '("source/CMakeLists.txt"
"test/CMakeLists.txt")
(("target_link_libraries\\((powertabeditor)" _ target)
(string-append "target_link_libraries(" target " "
(assoc-ref inputs "binutils")
"/lib/libbfd.a "
(assoc-ref inputs "gcc")
"/lib/libiberty.a "
"dl")))
#t)))))
(inputs
`(("boost" ,boost)
("alsa-lib" ,alsa-lib)
("qt" ,qt)
("withershins" ,withershins)
("gcc" ,gcc-4.8 "lib") ;for libiberty.a (for withershins)
("binutils" ,binutils) ;for -lbfd and -liberty (for withershins)
("timidity" ,timidity++)
("pugixml" ,pugixml)
("rtmidi" ,rtmidi)
("rapidjson" ,rapidjson)
("zlib" ,zlib)))
(native-inputs
`(("catch" ,catch-framework)
("pkg-config" ,pkg-config)))
(home-page "http://powertabs.net")
(synopsis "Guitar tablature editor")
(description
"Power Tab Editor 2.0 is the successor to the famous original Power Tab
Editor. It is compatible with Power Tab Editor 1.7 and Guitar Pro.")
(license license:gpl3+)))
(define-public tuxguitar (define-public tuxguitar
(package (package
(name "tuxguitar") (name "tuxguitar")

9
gnu/packages/openssl.scm
View file

@ -29,14 +29,14 @@ (define-module (gnu packages openssl)
(define-public openssl (define-public openssl
(package (package
(name "openssl") (name "openssl")
(version "1.0.2a") (version "1.0.2b")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "ftp://ftp.openssl.org/source/openssl-" version (uri (string-append "ftp://ftp.openssl.org/source/openssl-" version
".tar.gz")) ".tar.gz"))
(sha256 (sha256
(base32 (base32
"0jijgzf72659pikms2bc5w31h78xrd1h5zp2r01an2h340y3kdhm")) "0gwf4fy1yqmai6wph0g9lh09iarwxaa70hm7jm0rf1qakz68im6m"))
(patches (list (search-patch "openssl-runpath.patch"))))) (patches (list (search-patch "openssl-runpath.patch")))))
(build-system gnu-build-system) (build-system gnu-build-system)
(native-inputs `(("perl" ,perl))) (native-inputs `(("perl" ,perl)))
@ -91,7 +91,10 @@ (define-public perl-net-ssleay
"Net-SSLeay-" version ".tar.gz")) "Net-SSLeay-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"1m2wwzhjwsg0drlhp9w12fl6bsgj69v8gdz72jqrqll3qr7f408p")))) "1m2wwzhjwsg0drlhp9w12fl6bsgj69v8gdz72jqrqll3qr7f408p"))
(patches
;; XXX Try removing this patch for perl-net-ssleay > 1.68
(list (search-patch "perl-net-ssleay-disable-ede-test.patch")))))
(build-system perl-build-system) (build-system perl-build-system)
(inputs `(("openssl" ,openssl))) (inputs `(("openssl" ,openssl)))
(arguments (arguments

68
gnu/packages/package-management.scm
View file

@ -38,6 +38,7 @@ (define-module (gnu packages package-management)
#:use-module (gnu packages perl) #:use-module (gnu packages perl)
#:use-module (gnu packages curl) #:use-module (gnu packages curl)
#:use-module (gnu packages web) #:use-module (gnu packages web)
#:use-module (gnu packages man)
#:use-module (gnu packages emacs) #:use-module (gnu packages emacs)
#:use-module (gnu packages openssl) #:use-module (gnu packages openssl)
#:use-module (gnu packages bdw-gc)) #:use-module (gnu packages bdw-gc))
@ -74,31 +75,46 @@ (define-public guix-0.8.2
(string-append "--with-libgcrypt-prefix=" (string-append "--with-libgcrypt-prefix="
(assoc-ref %build-inputs (assoc-ref %build-inputs
"libgcrypt"))) "libgcrypt")))
#:phases (alist-cons-before #:phases (modify-phases %standard-phases
'configure 'copy-bootstrap-guile (add-before
(lambda* (#:key system inputs #:allow-other-keys) 'configure 'copy-bootstrap-guile
(define (boot-guile-version arch) (lambda* (#:key system inputs #:allow-other-keys)
(if (string=? "armhf" arch) (define (boot-guile-version arch)
"2.0.11" (if (string=? "armhf" arch)
"2.0.9")) "2.0.11"
"2.0.9"))
(define (copy arch) (define (copy arch)
(let ((guile (assoc-ref inputs (let ((guile (assoc-ref inputs
(string-append "boot-guile/" (string-append "boot-guile/"
arch))) arch)))
(target (string-append "gnu/packages/bootstrap/" (target (string-append "gnu/packages/bootstrap/"
arch "-linux/" arch "-linux/"
"/guile-" "/guile-"
(boot-guile-version arch) (boot-guile-version arch)
".tar.xz"))) ".tar.xz")))
(copy-file guile target))) (copy-file guile target)))
(copy "i686") (copy "i686")
(copy "x86_64") (copy "x86_64")
(copy "mips64el") (copy "mips64el")
(copy "armhf") (copy "armhf")
#t) #t))
%standard-phases))) (add-after
'install 'wrap-program
(lambda* (#:key inputs outputs #:allow-other-keys)
;; Make sure the 'guix' command finds GnuTLS and
;; Guile-JSON automatically.
(let* ((out (assoc-ref outputs "out"))
(json (assoc-ref inputs "guile-json"))
(gnutls (assoc-ref inputs "gnutls"))
(path (string-append
json "/share/guile/site/2.0:"
gnutls "/share/guile/site/2.0")))
(wrap-program (string-append out "/bin/guix")
`("GUILE_LOAD_PATH" ":" prefix (,path))
`("GUILE_LOAD_COMPILED_PATH" ":" prefix (,path)))
#t))))))
(native-inputs `(("pkg-config" ,pkg-config) (native-inputs `(("pkg-config" ,pkg-config)
("emacs" ,emacs-no-x))) ;for guix.el ("emacs" ,emacs-no-x))) ;for guix.el
(inputs (inputs
@ -150,7 +166,7 @@ (define guix-devel
;; ;;
;; Note: use a short commit id; when using the long one, the limit on socket ;; Note: use a short commit id; when using the long one, the limit on socket
;; file names is exceeded while running the tests. ;; file names is exceeded while running the tests.
(let ((commit "c2ee19e")) (let ((commit "a43b55f"))
(package (inherit guix-0.8.2) (package (inherit guix-0.8.2)
(version (string-append "0.8.2." commit)) (version (string-append "0.8.2." commit))
(source (origin (source (origin
@ -160,7 +176,8 @@ (define guix-devel
(commit commit))) (commit commit)))
(sha256 (sha256
(base32 (base32
"1gwc1gypgscxg2m3n2vd0mw4dmxr7vsisqgh3y0lr05q9z5742sj")))) "1r0l8gfh5nxc1j0sqj8ywkg280k9qbj7zsk33z84rvl7l0nwnk88"))
(file-name (string-append "guix-" version "-checkout"))))
(arguments (arguments
(substitute-keyword-arguments (package-arguments guix-0.8.2) (substitute-keyword-arguments (package-arguments guix-0.8.2)
((#:phases phases) ((#:phases phases)
@ -180,6 +197,7 @@ (define guix-devel
("gettext" ,gnu-gettext) ("gettext" ,gnu-gettext)
("texinfo" ,texinfo) ("texinfo" ,texinfo)
("graphviz" ,graphviz) ("graphviz" ,graphviz)
("help2man" ,help2man)
,@(package-native-inputs guix-0.8.2)))))) ,@(package-native-inputs guix-0.8.2))))))
(define-public guix guix-devel) (define-public guix guix-devel)

63
gnu/packages/patches/hydra-automake-1.15.patch Normal file
View file

@ -0,0 +1,63 @@
This patch takes a slightly different approach to solving the issue reported
at https://github.com/NixOS/hydra/issues/200. This fix allows us to use
Automake's parallel test harness.
--- source/configure.ac.orig 1969-12-31 18:00:01.000000000 -0600
+++ source/configure.ac 2015-04-15 10:58:15.974679278 -0500
@@ -33,7 +33,7 @@
fi
])
-NEED_PROG(perl, perl)
+NEED_PROG([PERL], perl)
NEED_PROG([NIX_STORE_PROGRAM], [nix-store])
--- source/tests/Makefile.am.orig 1969-12-31 18:00:01.000000000 -0600
+++ source/tests/Makefile.am 2015-04-15 11:00:35.846682904 -0500
@@ -1,19 +1,20 @@
-TESTS_ENVIRONMENT = \
- BZR_HOME="$(abs_builddir)/data" \
- HYDRA_DBI="dbi:SQLite:db.sqlite" \
- HYDRA_DATA="$(abs_builddir)/data" \
- HYDRA_HOME="$(top_srcdir)/src" \
- HYDRA_CONFIG= \
- NIX_REMOTE= \
- NIX_CONF_DIR="$(abs_builddir)/nix/etc/nix" \
- NIX_STATE_DIR="$(abs_builddir)/nix/var/nix" \
- NIX_MANIFESTS_DIR="$(abs_builddir)/nix/var/nix/manifests" \
- NIX_STORE_DIR="$(abs_builddir)/nix/store" \
- NIX_LOG_DIR="$(abs_builddir)/nix/var/log/nix" \
- NIX_BUILD_HOOK= \
- PERL5LIB="$(srcdir):$(top_srcdir)/src/lib:$$PERL5LIB" \
- PATH=$(abs_top_srcdir)/src/script:$(abs_top_srcdir)/src/c:$$PATH \
- perl -w
+AM_TESTS_ENVIRONMENT = \
+ BZR_HOME="$(abs_builddir)/data"; export BZR_HOME; \
+ HYDRA_DBI="dbi:SQLite:db.sqlite"; export HYDRA_DBI; \
+ HYDRA_DATA="$(abs_builddir)/data"; export HYDRA_DATA; \
+ HYDRA_HOME="$(top_srcdir)/src"; export HYDRA_HOME; \
+ HYDRA_CONFIG=; export HYDRA_CONFIG; \
+ NIX_REMOTE=; export NIX_REMOTE; \
+ NIX_CONF_DIR="$(abs_builddir)/nix/etc/nix"; export NIX_CONF_DIR; \
+ NIX_STATE_DIR="$(abs_builddir)/nix/var/nix"; export NIX_STATE_DIR; \
+ NIX_MANIFESTS_DIR="$(abs_builddir)/nix/var/nix/manifests"; export NIX_MANIFESTS_DIR; \
+ NIX_STORE_DIR="$(abs_builddir)/nix/store"; export NIX_STORE_DIR; \
+ NIX_LOG_DIR="$(abs_builddir)/nix/var/log/nix"; export NIX_LOG_DIR; \
+ NIX_BUILD_HOOK=; export NIX_BUILD_HOOK; \
+ PERL5LIB="$(srcdir):$(top_srcdir)/src/lib:$$PERL5LIB"; export PERL5LIB; \
+ PATH=$(abs_top_srcdir)/src/script:$(abs_top_srcdir)/src/c:$$PATH; export PATH;
+LOG_COMPILER = $(PERL)
+AM_LOG_FLAGS = -w
EXTRA_DIST = \
$(wildcard *.pm) \
@@ -33,7 +34,7 @@
check_SCRIPTS = db.sqlite repos
db.sqlite: $(top_srcdir)/src/sql/hydra-sqlite.sql
- $(TESTS_ENVIRONMENT) $(top_srcdir)/src/script/hydra-init
+ $(AM_TESTS_ENVIRONMENT) $(TESTS_ENVIRONMENT) $(top_srcdir)/src/script/hydra-init
repos: dirs

25
gnu/packages/patches/hydra-disable-darcs-test.patch Normal file
View file

@ -0,0 +1,25 @@
--- hydra-20150407.4c0e3e4/tests/evaluation-tests.pl 2015-04-15 12:00:19.000000000 -0500
+++ hydra-20150407.4c0e3e4/tests/evaluation-tests.pl 2015-04-17 08:53:04.940301471 -0500
@@ -7,7 +7,7 @@
my $db = Hydra::Model::DB->new;
-use Test::Simple tests => 72;
+use Test::Simple tests => 68;
hydra_setup($db);
@@ -103,13 +103,6 @@
uri => "$jobsBaseUri/hg-repo",
update => getcwd . "/jobs/hg-update.sh"
},
- {
- name => "darcs",
- nixexpr => "darcs-input.nix",
- type => "darcs",
- uri => "$jobsBaseUri/darcs-repo",
- update => getcwd . "/jobs/darcs-update.sh"
- }
);
foreach my $scm ( @scminputs ) {

23
gnu/packages/patches/perl-net-ssleay-disable-ede-test.patch Normal file
View file

@ -0,0 +1,23 @@
Disable a test that fails with openssl-1.0.2b.
--- Net-SSLeay-1.68/t/local/33_x509_create_cert.t.orig 2014-06-07 02:01:39.000000000 -0400
+++ Net-SSLeay-1.68/t/local/33_x509_create_cert.t 2015-06-12 03:38:57.620286888 -0400
@@ -2,7 +2,7 @@
use strict;
use warnings;
-use Test::More tests => 123;
+use Test::More tests => 122;
use Net::SSLeay qw/MBSTRING_ASC MBSTRING_UTF8 EVP_PK_RSA EVP_PKT_SIGN EVP_PKT_ENC/;
use File::Spec;
use utf8;
@@ -101,7 +101,8 @@
like(my $key_pem3 = Net::SSLeay::PEM_get_string_PrivateKey($pk,"password",$alg1), qr/-----BEGIN (ENCRYPTED|RSA) PRIVATE KEY-----/, "PEM_get_string_PrivateKey+passwd+enc_alg");
ok(my $alg2 = Net::SSLeay::EVP_get_cipherbyname("DES-EDE3-OFB"), "EVP_get_cipherbyname");
- like(my $key_pem4 = Net::SSLeay::PEM_get_string_PrivateKey($pk,"password",$alg2), qr/-----BEGIN (ENCRYPTED|RSA) PRIVATE KEY-----/, "PEM_get_string_PrivateKey+passwd+enc_alg");
+ # This test fails with openssl-1.0.2b
+ #like(my $key_pem4 = Net::SSLeay::PEM_get_string_PrivateKey($pk,"password",$alg2), qr/-----BEGIN (ENCRYPTED|RSA) PRIVATE KEY-----/, "PEM_get_string_PrivateKey+passwd+enc_alg");
is(Net::SSLeay::X509_NAME_print_ex($name), "O=Company Name,C=UK,CN=Common name text X509", "X509_NAME_print_ex");

12
gnu/packages/patches/python-disable-ssl-test.patch Normal file
View file

@ -0,0 +1,12 @@
Disable a test that fails with openssl-1.0.2b.
--- Lib/test/test_ssl.py.orig 2015-02-25 06:27:45.000000000 -0500
+++ Lib/test/test_ssl.py 2015-06-12 03:14:09.395212502 -0400
@@ -2718,6 +2718,7 @@
chatty=True, connectionchatty=True)
self.assertIs(stats['compression'], None)
+ @unittest.skipIf(True, "openssl 1.0.2b complains: dh key too small")
def test_dh_params(self):
# Check we can get a connection with ephemeral Diffie-Hellman
context = ssl.SSLContext(ssl.PROTOCOL_TLSv1)

22
gnu/packages/perl.scm
View file

@ -4106,6 +4106,28 @@ (define-public perl-set-infinite
(description "Set::Infinite is a set theory module for infinite sets.") (description "Set::Infinite is a set theory module for infinite sets.")
(license (package-license perl)))) (license (package-license perl))))
(define-public perl-set-object
(package
(name "perl-set-object")
(version "1.35")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/R/RU/RURBAN/"
"Set-Object-" version ".tar.gz"))
(sha256
(base32
"1rqf11274s3h17jgbimmg47k4fmayifajqwaa6lgm0z5qdy4v6hq"))))
(build-system perl-build-system)
(propagated-inputs
`(("perl-moose" ,perl-moose)
("perl-test-leaktrace" ,perl-test-leaktrace)))
(home-page "http://search.cpan.org/dist/Set-Object")
(synopsis "Unordered collections of Perl Objects")
(description "Set::Object provides efficient sets, unordered collections
of Perl objects without duplicates for scalars and references.")
(license artistic2.0)))
(define-public perl-set-scalar (define-public perl-set-scalar
(package (package
(name "perl-set-scalar") (name "perl-set-scalar")

4
gnu/packages/python.scm
View file

@ -207,7 +207,9 @@ (define-public python
(method url-fetch) (method url-fetch)
(uri (string-append "https://www.python.org/ftp/python/" (uri (string-append "https://www.python.org/ftp/python/"
version "/Python-" version ".tar.xz")) version "/Python-" version ".tar.xz"))
(patches (list (search-patch "python-fix-tests.patch"))) (patches (list (search-patch "python-fix-tests.patch")
;; XXX Try removing this patch for python > 3.4.3
(search-patch "python-disable-ssl-test.patch")))
(patch-flags '("-p0")) (patch-flags '("-p0"))
(sha256 (sha256
(base32 (base32

85
gnu/packages/web.scm
View file

@ -259,6 +259,27 @@ (define-public json-c
parse JSON formatted strings back into the C representation of JSON objects.") parse JSON formatted strings back into the C representation of JSON objects.")
(license l:x11))) (license l:x11)))
(define-public rapidjson
(package
(name "rapidjson")
(version "1.0.2")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/miloyip/rapidjson/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0rl6s0vg5y1dhh9vfl1lqay3sxf69sxjh0czxrjmasn7ng91wwf3"))))
(build-system cmake-build-system)
(home-page "https://github.com/miloyip/rapidjson")
(synopsis "JSON parser/generator for C++ with both SAX/DOM style API")
(description
"RapidJSON is a fast JSON parser/generator for C++ with both SAX/DOM
style API.")
(license l:expat)))
(define-public libwebsockets (define-public libwebsockets
(package (package
(name "libwebsockets") (name "libwebsockets")
@ -704,6 +725,41 @@ (define-public perl-catalyst-action-rest
regular method.") regular method.")
(license (package-license perl)))) (license (package-license perl))))
(define-public perl-catalyst-authentication-store-dbix-class
(package
(name "perl-catalyst-authentication-store-dbix-class")
(version "0.1506")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/I/IL/ILMARI/"
"Catalyst-Authentication-Store-DBIx-Class-"
version ".tar.gz"))
(sha256
(base32
"0i5ja7690fs9nhxcij6lw51j804sm8s06m5mvk1n8pi8jljrymvw"))))
(build-system perl-build-system)
(native-inputs
`(("perl-catalyst-plugin-authorization-roles"
,perl-catalyst-plugin-authorization-roles)
("perl-catalyst-plugin-session-state-cookie"
,perl-catalyst-plugin-session-state-cookie)
("perl-dbd-sqlite" ,perl-dbd-sqlite)
("perl-test-www-mechanize-catalyst" ,perl-test-www-mechanize-catalyst)))
(propagated-inputs
`(("perl-catalyst-runtime" ,perl-catalyst-runtime)
("perl-catalyst-plugin-authentication"
,perl-catalyst-plugin-authentication)
("perl-dbix-class" ,perl-dbix-class)
("perl-catalyst-model-dbic-schema" ,perl-catalyst-model-dbic-schema)))
(home-page
"http://search.cpan.org/dist/Catalyst-Authentication-Store-DBIx-Class")
(synopsis "Storage class for Catalyst authentication using DBIx::Class")
(description "The Catalyst::Authentication::Store::DBIx::Class class
provides access to authentication information stored in a database via
DBIx::Class.")
(license (package-license perl))))
(define-public perl-catalyst-component-instancepercontext (define-public perl-catalyst-component-instancepercontext
(package (package
(name "perl-catalyst-component-instancepercontext") (name "perl-catalyst-component-instancepercontext")
@ -905,6 +961,35 @@ (define-public perl-catalyst-plugin-authentication
system authorises them to do).") system authorises them to do).")
(license (package-license perl)))) (license (package-license perl))))
(define-public perl-catalyst-plugin-authorization-roles
(package
(name "perl-catalyst-plugin-authorization-roles")
(version "0.09")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://cpan/authors/id/B/BO/BOBTFISH/"
"Catalyst-Plugin-Authorization-Roles-"
version ".tar.gz"))
(sha256
(base32
"0l83lkwmq0lngwh8b1rv3r719pn8w1gdbyhjqm74rnd0wbjl8h7f"))))
(build-system perl-build-system)
(native-inputs
`(("perl-test-exception" ,perl-test-exception)))
(propagated-inputs
`(("perl-catalyst-plugin-authentication"
,perl-catalyst-plugin-authentication)
("perl-catalyst-runtime" ,perl-catalyst-runtime)
("perl-set-object" ,perl-set-object)
("perl-universal-isa" ,perl-universal-isa)))
(home-page
"http://search.cpan.org/dist/Catalyst-Plugin-Authorization-Roles")
(synopsis "Role-based authorization for Catalyst")
(description "Catalyst::Plugin::Authorization::Roles provides role-based
authorization for Catalyst based on Catalyst::Plugin::Authentication.")
(license (package-license perl))))
(define-public perl-catalyst-plugin-captcha (define-public perl-catalyst-plugin-captcha
(package (package
(name "perl-catalyst-plugin-captcha") (name "perl-catalyst-plugin-captcha")

37
gnu/packages/xml.scm
View file

@ -3,6 +3,7 @@
;;; Copyright © 2013, 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2013, 2015 Andreas Enge <andreas@enge.fr>
;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org>
;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com> ;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net>
;;; ;;;
;;; This file is part of GNU Guix. ;;; This file is part of GNU Guix.
;;; ;;;
@ -31,6 +32,7 @@ (define-module (gnu packages xml)
#:use-module ((guix licenses) #:prefix license:) #:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages) #:use-module (guix packages)
#:use-module (guix download) #:use-module (guix download)
#:use-module (guix build-system cmake)
#:use-module (guix build-system gnu) #:use-module (guix build-system gnu)
#:use-module (guix build-system perl) #:use-module (guix build-system perl)
#:use-module (guix build-system python) #:use-module (guix build-system python)
@ -368,6 +370,41 @@ (define-public perl-xml-dom
that conforms to the API of the Document Object Model.") that conforms to the API of the Document Object Model.")
(home-page "http://search.cpan.org/~tjmather/XML-DOM-1.44/lib/XML/DOM.pm"))) (home-page "http://search.cpan.org/~tjmather/XML-DOM-1.44/lib/XML/DOM.pm")))
(define-public pugixml
(package
(name "pugixml")
(version "1.6")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/zeux/pugixml/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0czbcv9aqf2rw3s9cljz2wb1f4zbhd07wnj7ykklklccl0ipfnwi"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f
#:out-of-source? #f
#:phases (modify-phases %standard-phases
(add-before
'configure 'chdir
(lambda _
(chdir "scripts")
#t)))))
(home-page "http://pugixml.org")
(synopsis "Light-weight, simple and fast XML parser for C++ with XPath support")
(description
"pugixml is a C++ XML processing library, which consists of a DOM-like
interface with rich traversal/modification capabilities, a fast XML parser
which constructs the DOM tree from an XML file/buffer, and an XPath 1.0
implementation for complex data-driven tree queries. Full Unicode support is
also available, with Unicode interface variants and conversions between
different Unicode encodings which happen automatically during
parsing/saving.")
(license license:expat)))
(define-public xmlto (define-public xmlto
(package (package
(name "xmlto") (name "xmlto")

3
gnu/system/install.scm
View file

@ -269,7 +269,8 @@ (define (normal-tty tty)
(guix-service #:authorize-hydra-key? #t) (guix-service #:authorize-hydra-key? #t)
;; Start udev so that useful device nodes are available. ;; Start udev so that useful device nodes are available.
(udev-service) ;; Use device-mapper rules for cryptsetup & co.
(udev-service #:rules (list lvm2))
;; Add the 'cow-store' service, which users have to start manually ;; Add the 'cow-store' service, which users have to start manually
;; since it takes the installation directory as an argument. ;; since it takes the installation directory as an argument.

4
guix/build-system/gnu.scm
View file

@ -160,12 +160,10 @@ (define (static-libgcc-package p)
"A version of P linked with `-static-gcc'." "A version of P linked with `-static-gcc'."
(package-with-extra-configure-variable p "LDFLAGS" "-static-libgcc")) (package-with-extra-configure-variable p "LDFLAGS" "-static-libgcc"))
(define* (static-package p #:optional (loc (current-source-location)) (define* (static-package p #:key (strip-all? #t))
#:key (strip-all? #t))
"Return a statically-linked version of package P. If STRIP-ALL? is true, "Return a statically-linked version of package P. If STRIP-ALL? is true,
use `--strip-all' as the arguments to `strip'." use `--strip-all' as the arguments to `strip'."
(package (inherit p) (package (inherit p)
(location (source-properties->location loc))
(arguments (arguments
(let ((a (default-keyword-arguments (package-arguments p) (let ((a (default-keyword-arguments (package-arguments p)
'(#:configure-flags '() '(#:configure-flags '()

8
guix/build/haskell-build-system.scm
View file

@ -166,13 +166,13 @@ (define* (register #:key name system inputs outputs #:allow-other-keys)
(package-name-version haskell) (package-name-version haskell)
"/package.conf.d")) "/package.conf.d"))
(id-rx (make-regexp "^id: *(.*)$")) (id-rx (make-regexp "^id: *(.*)$"))
(lib-rx (make-regexp "lib.*\\.(a|so)")) (config-file (string-append out "/" name ".conf"))
(config-file (string-append config-dir "/" name ".conf"))
(params (params
(list (string-append "--gen-pkg-config=" config-file)))) (list (string-append "--gen-pkg-config=" config-file))))
(unless (null? (find-files lib lib-rx)) (run-setuphs "register" params)
;; The conf file is created only when there is a library to register.
(when (file-exists? config-file)
(mkdir-p config-dir) (mkdir-p config-dir)
(run-setuphs "register" params)
(let ((config-file-name+id (let ((config-file-name+id
(call-with-ascii-input-file config-file (cut grep id-rx <>)))) (call-with-ascii-input-file config-file (cut grep id-rx <>))))
(rename-file config-file (rename-file config-file

9
guix/download.scm
View file

@ -282,14 +282,15 @@ (define builder
))))) )))))
(define* (download-to-store store url #:optional (name (basename url)) (define* (download-to-store store url #:optional (name (basename url))
#:key (log (current-error-port))) #:key (log (current-error-port)) recursive?)
"Download from URL to STORE, either under NAME or URL's basename if "Download from URL to STORE, either under NAME or URL's basename if
omitted. Write progress reports to LOG." omitted. Write progress reports to LOG. RECURSIVE? has the same effect as
the same-named parameter of 'add-to-store'."
(define uri (define uri
(string->uri url)) (string->uri url))
(if (or (not uri) (memq (uri-scheme uri) '(file #f))) (if (or (not uri) (memq (uri-scheme uri) '(file #f)))
(add-to-store store name #f "sha256" (add-to-store store name recursive? "sha256"
(if uri (uri-path uri) url)) (if uri (uri-path uri) url))
(call-with-temporary-output-file (call-with-temporary-output-file
(lambda (temp port) (lambda (temp port)
@ -298,6 +299,6 @@ (define uri
(build:url-fetch url temp #:mirrors %mirrors)))) (build:url-fetch url temp #:mirrors %mirrors))))
(close port) (close port)
(and result (and result
(add-to-store store name #f "sha256" temp))))))) (add-to-store store name recursive? "sha256" temp)))))))
;;; download.scm ends here ;;; download.scm ends here

3
guix/packages.scm
View file

@ -240,7 +240,8 @@ (define-record-type* <package>
(location package-location (location package-location
(default (and=> (current-source-location) (default (and=> (current-source-location)
source-properties->location)))) source-properties->location))
(innate)))
(set-record-type-printer! <package> (set-record-type-printer! <package>
(lambda (package port) (lambda (package port)

8
guix/profiles.scm
View file

@ -500,7 +500,10 @@ (define db-dir
(string-append #$output "/" db-subdir)) (string-append #$output "/" db-subdir))
(define (conf-files top) (define (conf-files top)
(find-files (string-append top "/" db-subdir) "\\.conf$")) (let ((db (string-append top "/" db-subdir)))
(if (file-exists? db)
(find-files db "\\.conf$")
'())))
(define (copy-conf-file conf) (define (copy-conf-file conf)
(let ((base (basename conf))) (let ((base (basename conf)))
@ -509,7 +512,8 @@ (define (copy-conf-file conf)
(system* (string-append #+ghc "/bin/ghc-pkg") "init" db-dir) (system* (string-append #+ghc "/bin/ghc-pkg") "init" db-dir)
(for-each copy-conf-file (for-each copy-conf-file
(append-map conf-files (append-map conf-files
'#$(manifest-inputs manifest))) (delete-duplicates
'#$(manifest-inputs manifest))))
(let ((success (let ((success
(zero? (zero?
(system* (string-append #+ghc "/bin/ghc-pkg") "recache" (system* (string-append #+ghc "/bin/ghc-pkg") "recache"

253
guix/records.scm
View file

@ -42,106 +42,123 @@ (define-syntax record-error
(format #f fmt args ...) (format #f fmt args ...)
form)))) form))))
(eval-when (expand load eval) (define-syntax make-syntactic-constructor
;; This procedure is a syntactic helper used by 'define-record-type*', hence (syntax-rules ()
;; 'eval-when'. "Make the syntactic constructor NAME for TYPE, that calls CTOR, and
expects all of EXPECTED fields to be initialized. DEFAULTS is the list of
FIELD/DEFAULT-VALUE tuples, THUNKED is the list of identifiers of thunked
fields, and DELAYED is the list of identifiers of delayed fields."
((_ type name ctor (expected ...)
#:thunked thunked
#:delayed delayed
#:innate innate
#:defaults defaults)
(define-syntax name
(lambda (s)
(define (record-inheritance orig-record field+value)
;; Produce code that returns a record identical to ORIG-RECORD,
;; except that values for the FIELD+VALUE alist prevail.
(define (field-inherited-value f)
(and=> (find (lambda (x)
(eq? f (car (syntax->datum x))))
field+value)
car))
(define* (make-syntactic-constructor type name ctor fields ;; Make sure there are no unknown field names.
#:key (thunked '()) (defaults '()) (let* ((fields (map (compose car syntax->datum) field+value))
(delayed '())) (unexpected (lset-difference eq? fields '(expected ...))))
"Make the syntactic constructor NAME for TYPE, that calls CTOR, and expects (when (pair? unexpected)
all of FIELDS to be initialized. DEFAULTS is the list of FIELD/DEFAULT-VALUE (record-error 'name s "extraneous field initializers ~a"
tuples, THUNKED is the list of identifiers of thunked fields, and DELAYED is unexpected)))
the list of identifiers of delayed fields."
(with-syntax ((type type)
(name name)
(ctor ctor)
(expected fields)
(defaults defaults))
#`(define-syntax name
(lambda (s)
(define (record-inheritance orig-record field+value)
;; Produce code that returns a record identical to ORIG-RECORD,
;; except that values for the FIELD+VALUE alist prevail.
(define (field-inherited-value f)
(and=> (find (lambda (x)
(eq? f (car (syntax->datum x))))
field+value)
car))
;; Make sure there are no unknown field names. #`(make-struct type 0
(let* ((fields (map (compose car syntax->datum) field+value)) #,@(map (lambda (field index)
(unexpected (lset-difference eq? fields 'expected))) (or (field-inherited-value field)
(when (pair? unexpected) (if (innate-field? field)
(record-error 'name s "extraneous field initializers ~a" (wrap-field-value
unexpected))) field (field-default-value field))
#`(struct-ref #,orig-record
#,index))))
'(expected ...)
(iota (length '(expected ...))))))
#`(make-struct type 0 (define (thunked-field? f)
#,@(map (lambda (field index) (memq (syntax->datum f) 'thunked))
(or (field-inherited-value field)
#`(struct-ref #,orig-record
#,index)))
'expected
(iota (length 'expected)))))
(define (thunked-field? f) (define (delayed-field? f)
(memq (syntax->datum f) '#,thunked)) (memq (syntax->datum f) 'delayed))
(define (delayed-field? f) (define (innate-field? f)
(memq (syntax->datum f) '#,delayed)) (memq (syntax->datum f) 'innate))
(define (wrap-field-value f value) (define (wrap-field-value f value)
(cond ((thunked-field? f) (cond ((thunked-field? f)
#`(lambda () #,value)) #`(lambda () #,value))
((delayed-field? f) ((delayed-field? f)
#`(delay #,value)) #`(delay #,value))
(else value))) (else value)))
(define (field-bindings field+value) (define default-values
;; Return field to value bindings, for use in 'let*' below. ;; List of symbol/value tuples.
(map (lambda (field+value) (map (match-lambda
(syntax-case field+value () ((f v)
((field value) (list (syntax->datum f) v)))
#`(field #'defaults))
#,(wrap-field-value #'field #'value)))))
field+value))
(syntax-case s (inherit #,@fields) (define (field-default-value f)
((_ (inherit orig-record) (field value) (... ...)) (car (assoc-ref default-values (syntax->datum f))))
#`(let* #,(field-bindings #'((field value) (... ...)))
#,(record-inheritance #'orig-record
#'((field value) (... ...)))))
((_ (field value) (... ...))
(let ((fields (map syntax->datum #'(field (... ...))))
(dflt (map (match-lambda
((f v)
(list (syntax->datum f) v)))
#'defaults)))
(define (field-value f) (define (field-bindings field+value)
(or (and=> (find (lambda (x) ;; Return field to value bindings, for use in 'let*' below.
(eq? f (car (syntax->datum x)))) (map (lambda (field+value)
#'((field value) (... ...))) (syntax-case field+value ()
car) ((field value)
(let ((value #`(field
(car (assoc-ref dflt (syntax->datum f))))) #,(wrap-field-value #'field #'value)))))
(wrap-field-value f value)))) field+value))
(let ((fields (append fields (map car dflt)))) (syntax-case s (inherit expected ...)
(cond ((lset= eq? fields 'expected) ((_ (inherit orig-record) (field value) (... ...))
#`(let* #,(field-bindings #`(let* #,(field-bindings #'((field value) (... ...)))
#'((field value) (... ...))) #,(record-inheritance #'orig-record
(ctor #,@(map field-value 'expected)))) #'((field value) (... ...)))))
((pair? (lset-difference eq? fields 'expected)) ((_ (field value) (... ...))
(record-error 'name s (let ((fields (map syntax->datum #'(field (... ...)))))
"extraneous field initializers ~a" (define (field-value f)
(lset-difference eq? fields (or (and=> (find (lambda (x)
'expected))) (eq? f (car (syntax->datum x))))
(else #'((field value) (... ...)))
(record-error 'name s car)
"missing field initializers ~a" (wrap-field-value f (field-default-value f))))
(lset-difference eq? 'expected
fields))))))))))))) (let ((fields (append fields (map car default-values))))
(cond ((lset= eq? fields '(expected ...))
#`(let* #,(field-bindings
#'((field value) (... ...)))
(ctor #,@(map field-value '(expected ...)))))
((pair? (lset-difference eq? fields
'(expected ...)))
(record-error 'name s
"extraneous field initializers ~a"
(lset-difference eq? fields
'(expected ...))))
(else
(record-error 'name s
"missing field initializers ~a"
(lset-difference eq?
'(expected ...)
fields)))))))))))))
(define-syntax-rule (define-field-property-predicate predicate property)
"Define PREDICATE as a procedure that takes a syntax object and, when passed
a field specification, returns the field name if it has the given PROPERTY."
(define (predicate s)
(syntax-case s (property)
((field (property values (... ...)) _ (... ...))
#'field)
((field _ properties (... ...))
(predicate #'(field properties (... ...))))
(_ #f))))
(define-syntax define-record-type* (define-syntax define-record-type*
(lambda (s) (lambda (s)
@ -154,7 +171,8 @@ (define-record-type* <thing> thing make-thing
thing? thing?
(name thing-name (default \"chbouib\")) (name thing-name (default \"chbouib\"))
(port thing-port (port thing-port
(default (current-output-port)) (thunked))) (default (current-output-port)) (thunked))
(loc thing-location (innate) (default (current-source-location))))
This example defines a macro 'thing' that can be used to instantiate records This example defines a macro 'thing' that can be used to instantiate records
of this type: of this type:
@ -180,33 +198,20 @@ (define-record-type* <thing> thing make-thing
(thing (inherit x) (name \"bar\")) (thing (inherit x) (name \"bar\"))
This expression returns a new object equal to 'x' except for its 'name' This expression returns a new object equal to 'x' except for its 'name'
field." field and its 'loc' field---the latter is marked as \"innate\", so it is not
inherited."
(define (field-default-value s) (define (field-default-value s)
(syntax-case s (default) (syntax-case s (default)
((field (default val) _ ...) ((field (default val) _ ...)
(list #'field #'val)) (list #'field #'val))
((field _ options ...) ((field _ properties ...)
(field-default-value #'(field options ...))) (field-default-value #'(field properties ...)))
(_ #f))) (_ #f)))
(define (delayed-field? s) (define-field-property-predicate delayed-field? delayed)
;; Return the field name if the field defined by S is delayed. (define-field-property-predicate thunked-field? thunked)
(syntax-case s (delayed) (define-field-property-predicate innate-field? innate)
((field (delayed) _ ...)
#'field)
((field _ options ...)
(delayed-field? #'(field options ...)))
(_ #f)))
(define (thunked-field? s)
;; Return the field name if the field defined by S is thunked.
(syntax-case s (thunked)
((field (thunked) _ ...)
#'field)
((field _ options ...)
(thunked-field? #'(field options ...)))
(_ #f)))
(define (wrapped-field? s) (define (wrapped-field? s)
(or (thunked-field? s) (delayed-field? s))) (or (thunked-field? s) (delayed-field? s)))
@ -215,7 +220,7 @@ (define (wrapped-field-accessor-name field)
;; Return the name (an unhygienic syntax object) of the "real" ;; Return the name (an unhygienic syntax object) of the "real"
;; getter for field, which is assumed to be a wrapped field. ;; getter for field, which is assumed to be a wrapped field.
(syntax-case field () (syntax-case field ()
((field get options ...) ((field get properties ...)
(let* ((getter (syntax->datum #'get)) (let* ((getter (syntax->datum #'get))
(real-getter (symbol-append '% getter '-real))) (real-getter (symbol-append '% getter '-real)))
(datum->syntax #'get real-getter))))) (datum->syntax #'get real-getter)))))
@ -224,7 +229,7 @@ (define (field-spec->srfi-9 field)
;; Convert a field spec of our style to a SRFI-9 field spec of the ;; Convert a field spec of our style to a SRFI-9 field spec of the
;; form (field get). ;; form (field get).
(syntax-case field () (syntax-case field ()
((name get options ...) ((name get properties ...)
#`(name #`(name
#,(if (wrapped-field? field) #,(if (wrapped-field? field)
(wrapped-field-accessor-name field) (wrapped-field-accessor-name field)
@ -252,12 +257,13 @@ (define (delayed-field-accessor-definition field)
(syntax-case s () (syntax-case s ()
((_ type syntactic-ctor ctor pred ((_ type syntactic-ctor ctor pred
(field get options ...) ...) (field get properties ...) ...)
(let* ((field-spec #'((field get options ...) ...)) (let* ((field-spec #'((field get properties ...) ...))
(thunked (filter-map thunked-field? field-spec)) (thunked (filter-map thunked-field? field-spec))
(delayed (filter-map delayed-field? field-spec)) (delayed (filter-map delayed-field? field-spec))
(innate (filter-map innate-field? field-spec))
(defaults (filter-map field-default-value (defaults (filter-map field-default-value
#'((field options ...) ...)))) #'((field properties ...) ...))))
(with-syntax (((field-spec* ...) (with-syntax (((field-spec* ...)
(map field-spec->srfi-9 field-spec)) (map field-spec->srfi-9 field-spec))
((thunked-field-accessor ...) ((thunked-field-accessor ...)
@ -277,13 +283,14 @@ (define-record-type type
(ctor field ...) (ctor field ...)
pred pred
field-spec* ...) field-spec* ...)
(begin thunked-field-accessor ... thunked-field-accessor ...
delayed-field-accessor ...) delayed-field-accessor ...
#,(make-syntactic-constructor #'type #'syntactic-ctor #'ctor (make-syntactic-constructor type syntactic-ctor ctor
#'(field ...) (field ...)
#:thunked thunked #:thunked #,thunked
#:delayed delayed #:delayed #,delayed
#:defaults defaults)))))))) #:innate #,innate
#:defaults #,defaults))))))))
(define* (alist->record alist make keys (define* (alist->record alist make keys
#:optional (multiple-value-keys '())) #:optional (multiple-value-keys '()))

13
guix/scripts/build.scm
View file

@ -77,19 +77,26 @@ (define (tarball-base-name file-name)
;; Return the "base" of FILE-NAME, removing '.tar.gz' or similar ;; Return the "base" of FILE-NAME, removing '.tar.gz' or similar
;; extensions. ;; extensions.
;; TODO: Factorize. ;; TODO: Factorize.
(cond ((numeric-extension? file-name) (cond ((not (file-extension file-name))
file-name)
((numeric-extension? file-name)
file-name) file-name)
((string=? (file-extension file-name) "tar") ((string=? (file-extension file-name) "tar")
(file-sans-extension file-name)) (file-sans-extension file-name))
((file-extension file-name)
(tarball-base-name (file-sans-extension file-name)))
(else (else
(tarball-base-name (file-sans-extension file-name))))) file-name)))
(let ((base (tarball-base-name (basename uri)))) (let ((base (tarball-base-name (basename uri))))
(let-values (((name version) (let-values (((name version)
(package-name->name+version base))) (package-name->name+version base)))
(package (inherit p) (package (inherit p)
(version (or version (package-version p))) (version (or version (package-version p)))
(source (download-to-store store uri))))))
;; Use #:recursive? #t to allow for directories.
(source (download-to-store store uri
#:recursive? #t))))))
;;; ;;;

28
guix/scripts/environment.scm
View file

@ -232,20 +232,22 @@ (define (handle-argument arg result)
(alist-cons 'package arg result)) (alist-cons 'package arg result))
(with-error-handling (with-error-handling
(with-store store (let* ((opts (parse-command-line args %options (list %default-options)
(let* ((opts (parse-command-line args %options (list %default-options) #:argument-handler handle-argument))
#:argument-handler handle-argument)) (pure? (assoc-ref opts 'pure))
(pure? (assoc-ref opts 'pure)) (ad-hoc? (assoc-ref opts 'ad-hoc?))
(ad-hoc? (assoc-ref opts 'ad-hoc?)) (command (assoc-ref opts 'exec))
(command (assoc-ref opts 'exec)) (packages (pick-all (options/resolve-packages opts) 'package))
(packages (pick-all (options/resolve-packages opts) 'package)) (inputs (if ad-hoc?
(inputs (if ad-hoc?
(packages+propagated-inputs packages) (packages+propagated-inputs packages)
(packages->transitive-inputs packages))) (packages->transitive-inputs packages))))
(drvs (run-with-store store (with-store store
(mbegin %store-monad (define drvs
(set-guile-for-build (default-guile)) (run-with-store store
(build-inputs inputs opts))))) (mbegin %store-monad
(set-guile-for-build (default-guile))
(build-inputs inputs opts))))
(cond ((assoc-ref opts 'dry-run?) (cond ((assoc-ref opts 'dry-run?)
#t) #t)
((assoc-ref opts 'search-paths) ((assoc-ref opts 'search-paths)

10
guix/tests.scm
View file

@ -63,8 +63,16 @@ (define (open-connection-for-tests)
store))) store)))
(define (random-seed)
(or (and=> (getenv "GUIX_TESTS_RANDOM_SEED")
number->string)
(logxor (getpid) (car (gettimeofday)))))
(define %seed (define %seed
(seed->random-state (logxor (getpid) (car (gettimeofday))))) (let ((seed (random-seed)))
(format (current-error-port) "random seed for tests: ~a~%"
seed)
(seed->random-state seed)))
(define (random-text) (define (random-text)
"Return the hexadecimal representation of a random number." "Return the hexadecimal representation of a random number."

32
tests/records.scm
View file

@ -56,7 +56,7 @@ (define-record-type* <bar> bar make-bar
(and (match (bar (x 1) (y (+ x 1)) (z (* y 2))) (and (match (bar (x 1) (y (+ x 1)) (z (* y 2)))
(($ <bar> 1 2 4) #t)) (($ <bar> 1 2 4) #t))
(match (bar (x 7) (z (* x 3))) (match (bar (x 7) (z (* x 3)))
(($ <bar> 7 42 21))) (($ <bar> 7 42 21) #t))
(match (bar (z 21) (x (/ z 3))) (match (bar (z 21) (x (/ z 3)))
(($ <bar> 7 42 21) #t))))) (($ <bar> 7 42 21) #t)))))
@ -90,6 +90,20 @@ (define-record-type* <foo> foo make-foo
(match b (($ <foo> 1 2) #t)) (match b (($ <foo> 1 2) #t))
(equal? b c))))) (equal? b c)))))
(test-assert "define-record-type* & inherit & innate"
(begin
(define-record-type* <foo> foo make-foo
foo?
(bar foo-bar (innate) (default 42)))
(let* ((a (foo (bar 1)))
(b (foo (inherit a)))
(c (foo (inherit a) (bar 3)))
(d (foo)))
(and (match a (($ <foo> 1) #t))
(match b (($ <foo> 42) #t))
(match c (($ <foo> 3) #t))
(match d (($ <foo> 42) #t))))))
(test-assert "define-record-type* & thunked" (test-assert "define-record-type* & thunked"
(begin (begin
(define-record-type* <foo> foo make-foo (define-record-type* <foo> foo make-foo
@ -139,6 +153,22 @@ (define-record-type* <foo> foo make-foo
(parameterize ((mark (cons 'a 'b))) (parameterize ((mark (cons 'a 'b)))
(eq? (foo-baz y) (mark)))))))) (eq? (foo-baz y) (mark))))))))
(test-assert "define-record-type* & thunked & innate"
(let ((mark (make-parameter #f)))
(define-record-type* <foo> foo make-foo
foo?
(bar foo-bar (thunked) (innate) (default (mark)))
(baz foo-baz (default #f)))
(let* ((x (foo (bar 42)))
(y (foo (inherit x) (baz 'unused))))
(and (procedure? (struct-ref x 0))
(equal? (foo-bar x) 42)
(parameterize ((mark (cons 'a 'b)))
(eq? (foo-bar y) (mark)))
(parameterize ((mark (cons 'a 'b)))
(eq? (foo-bar y) (mark)))))))
(test-assert "define-record-type* & delayed" (test-assert "define-record-type* & delayed"
(begin (begin
(define-record-type* <foo> foo make-foo (define-record-type* <foo> foo make-foo