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gnu: r-minimal: Do not compress serialized files.

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* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase
"patch-which" with "do-not-compress-serialized-files".
[propagated-inputs]: Move "which" from here...
[inputs]: ...to here.

Fixes <https://bugs.gnu.org/28157>.
This commit is contained in:
Ricardo Wurmus 2017-08-22 12:59:48 +02:00
parent 6be54a8751
commit bd3a184613
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GPG key ID: 197A5888235FACAC
1 changed files with 6 additions and 7 deletions
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13
gnu/packages/statistics.scm
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@ -126,11 +126,12 @@ (define-public r-minimal
"PKG_BUILT_STAMP=1970-01-01")
#:phases
(modify-phases %standard-phases
;; FIXME: see bug #28157.
(add-before 'configure 'patch-which
(add-before 'configure 'do-not-compress-serialized-files
(lambda* (#:key inputs #:allow-other-keys)
(substitute* "src/library/base/R/unix/system.unix.R"
(("@WHICH@") "which"))
;; This ensures that Guix can detect embedded store references;
;; see bug #28157 for details.
(substitute* "src/library/base/makebasedb.R"
(("compress = TRUE") "compress = FALSE"))
#t))
(add-before 'configure 'patch-uname
(lambda* (#:key inputs #:allow-other-keys)
@ -250,10 +251,8 @@ (define-public r-minimal
("libxt" ,libxt)
("pcre" ,pcre)
("readline" ,readline)
("which" ,which)
("zlib" ,zlib)))
;; FIXME: By default Sys.which embeds a reference to "which", but this
;; reference is not detected by Guix (see bug #28157).
(propagated-inputs `(("which" ,which)))
(native-search-paths
(list (search-path-specification
(variable "R_LIBS_SITE")