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gnu: arpack-ng: Update to 3.5.0; use 3.3.0 for julia.

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Partly fixes <https://bugs.gnu.org/30282>.

* gnu/packages/maths.scm (arpack-ng): Update to 3.5.0.
[native-inputs]: New field.
(arpack-ng-3.3.0): New variable.
* gnu/packages/julia.scm (julia)[inputs]: Use ARPACK-NG-3.3.0.
This commit is contained in:
Ludovic Courtès 2018-03-12 16:06:17 +01:00 committed by Ludovic Courtès
parent 93f3b7762e
commit c0edb5b543
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2 changed files with 35 additions and 7 deletions
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7
gnu/packages/julia.scm
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@ -315,7 +315,12 @@ (define-public julia
"USE_SYSTEM_OPENSPECFUN=1"))) "USE_SYSTEM_OPENSPECFUN=1")))
(inputs (inputs
`(("llvm" ,llvm) `(("llvm" ,llvm)
("arpack-ng" ,arpack-ng)
;; The bundled version is 3.3.0 so stick to that version. With other
;; versions, we get test failures in 'linalg/arnoldi' as described in
;; <https://bugs.gnu.org/30282>.
("arpack-ng" ,arpack-ng-3.3.0)
("coreutils" ,coreutils) ;for bindings to "mkdir" and the like ("coreutils" ,coreutils) ;for bindings to "mkdir" and the like
("lapack" ,lapack) ("lapack" ,lapack)
("openblas" ,openblas) ;Julia does not build with Atlas ("openblas" ,openblas) ;Julia does not build with Atlas

35
gnu/packages/maths.scm
View file

@ -12,7 +12,7 @@
;;; Copyright © 2015 Fabian Harfert <fhmgufs@web.de> ;;; Copyright © 2015 Fabian Harfert <fhmgufs@web.de>
;;; Copyright © 2016 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net> ;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net>
;;; Copyright © 2016, 2017 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2016 Leo Famulari <leo@famulari.name> ;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be> ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be>
;;; Copyright © 2017 Paul Garlick <pgarlick@tourbillion-technology.com> ;;; Copyright © 2017 Paul Garlick <pgarlick@tourbillion-technology.com>
@ -418,18 +418,26 @@ (define-public cddlib
(define-public arpack-ng (define-public arpack-ng
(package (package
(name "arpack-ng") (name "arpack-ng")
(version "3.2.0") (version "3.5.0")
(home-page "https://github.com/opencollab/arpack-ng")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://github.com/opencollab/arpack-ng/archive/" (uri (string-append home-page "/archive/" version ".tar.gz"))
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz"))
(sha256 (sha256
(base32 (base32
"1fwch6vipms1ispzg2djvbzv5wag36f1dmmr3xs3mbp6imfyhvff")))) "0f8jx3fifmj9qdp289zr7r651y1q48k1jya859rqxq62mvis7xsh"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(home-page "https://github.com/opencollab/arpack-ng") (arguments
'(#:phases (modify-phases %standard-phases
(add-after 'unpack 'autoreconf
(lambda _
(invoke "autoreconf" "-vfi"))))))
(native-inputs
`(("autoconf" ,autoconf)
("automake" ,automake)
("libtool" ,libtool)))
(inputs (inputs
`(("lapack" ,lapack) `(("lapack" ,lapack)
("fortran" ,gfortran))) ("fortran" ,gfortran)))
@ -440,6 +448,21 @@ (define-public arpack-ng
(license (license:non-copyleft "file://COPYING" (license (license:non-copyleft "file://COPYING"
"See COPYING in the distribution.")))) "See COPYING in the distribution."))))
(define-public arpack-ng-3.3.0
(package
(inherit arpack-ng)
(version "3.3.0")
(name (package-name arpack-ng))
(home-page (package-home-page arpack-ng))
(source
(origin
(method url-fetch)
(uri (string-append home-page "/archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"1cz53wqzcf6czmcpfb3vb61xi0rn5bwhinczl65hpmbrglg82ndd"))))))
(define-public arpack-ng-openmpi (define-public arpack-ng-openmpi
(package (inherit arpack-ng) (package (inherit arpack-ng)
(name "arpack-ng-openmpi") (name "arpack-ng-openmpi")