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gnu: r-biomart: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-biomart): Move from here...
* gnu/packages/bioconductor.scm (r-biomart): ...to here.
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zimoun 2021-03-15 19:09:00 +01:00 committed by Ricardo Wurmus
parent 16c7e79ebb
commit c11b541fba
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2 changed files with 38 additions and 38 deletions
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38
gnu/packages/bioconductor.scm
View file

@ -1621,6 +1621,44 @@ (define-public r-biobase
on Bioconductor or which replace R functions.")
(license license:artistic2.0)))
(define-public r-biomart
(package
(name "r-biomart")
(version "2.46.3")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "biomaRt" version))
(sha256
(base32
"0gwmd0ykpv0gyh34c56g5m12lil20fvig49f3ih1jxrxf3q4wmq7"))))
(properties
`((upstream-name . "biomaRt")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biocfilecache" ,r-biocfilecache)
("r-httr" ,r-httr)
("r-openssl" ,r-openssl)
("r-progress" ,r-progress)
("r-rappdirs" ,r-rappdirs)
("r-stringr" ,r-stringr)
("r-xml" ,r-xml)
("r-xml2" ,r-xml2)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/biomaRt")
(synopsis "Interface to BioMart databases")
(description
"biomaRt provides an interface to a growing collection of databases
implementing the @url{BioMart software suite, http://www.biomart.org}. The
package enables retrieval of large amounts of data in a uniform way without
the need to know the underlying database schemas or write complex SQL queries.
Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene,
Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt
users direct access to a diverse set of data and enable a wide range of
powerful online queries from gene annotation to database mining.")
(license license:artistic2.0)))
(define-public r-category
(package
(name "r-category")

38
gnu/packages/bioinformatics.scm
View file

@ -7691,44 +7691,6 @@ (define-public bio-vcf
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
(define-public r-biomart
(package
(name "r-biomart")
(version "2.46.3")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "biomaRt" version))
(sha256
(base32
"0gwmd0ykpv0gyh34c56g5m12lil20fvig49f3ih1jxrxf3q4wmq7"))))
(properties
`((upstream-name . "biomaRt")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biocfilecache" ,r-biocfilecache)
("r-httr" ,r-httr)
("r-openssl" ,r-openssl)
("r-progress" ,r-progress)
("r-rappdirs" ,r-rappdirs)
("r-stringr" ,r-stringr)
("r-xml" ,r-xml)
("r-xml2" ,r-xml2)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/biomaRt")
(synopsis "Interface to BioMart databases")
(description
"biomaRt provides an interface to a growing collection of databases
implementing the @url{BioMart software suite, http://www.biomart.org}. The
package enables retrieval of large amounts of data in a uniform way without
the need to know the underlying database schemas or write complex SQL queries.
Examples of BioMart databases are Ensembl, COSMIC, Uniprot, HGNC, Gramene,
Wormbase and dbSNP mapped to Ensembl. These major databases give biomaRt
users direct access to a diverse set of data and enable a wide range of
powerful online queries from gene annotation to database mining.")
(license license:artistic2.0)))
(define-public r-biocparallel
(package
(name "r-biocparallel")