gnu: Add r-singlet.

* gnu/packages/bioinformatics.scm (r-singlet): New variable.
This commit is contained in:
Ricardo Wurmus 2023-06-02 21:18:09 +02:00
parent 76eda50717
commit c11b92a8aa
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@ -872,6 +872,45 @@ (define-public r-rhtslib12
developers of other R packages who wish to make use of HTSlib.")
(license license:lgpl2.0+))))
(define-public r-singlet
(let ((commit "765a6c45081807a1522f0e8983e2417822a36f36")
(revision "1"))
(package
(name "r-singlet")
(version (git-version "0.99.26" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/zdebruine/singlet")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"040v8wzl9qr8ribr6qss61fz4698d14cqs8nxbc8hqwiqlpy3vs4"))))
(properties `((upstream-name . "singlet")))
(build-system r-build-system)
(propagated-inputs (list r-dplyr
r-fgsea
r-ggplot2
r-knitr
r-limma
r-matrix
r-msigdbr
r-rcpp
r-rcppml/devel
r-reshape2
r-scuttle
r-seurat))
(native-inputs (list r-knitr))
(home-page "https://github.com/zdebruine/singlet")
(synopsis "Non-negative Matrix Factorization for single-cell analysis")
(description
"This is a package for fast @dfn{Non-negative Matrix
Factorization} (NMF) with automatic rank-determination for dimension reduction
of single-cell data using Seurat, RcppML nmf, SingleCellExperiments and
similar.")
(license license:gpl2+))))
(define-public r-stringendo
(let ((commit "83b8f2d82a09b33b9e895438bb523a021138be01")
(revision "1"))