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gnu: Add r-singlet.
* gnu/packages/bioinformatics.scm (r-singlet): New variable.
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@ -872,6 +872,45 @@ (define-public r-rhtslib12
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developers of other R packages who wish to make use of HTSlib.")
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developers of other R packages who wish to make use of HTSlib.")
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(license license:lgpl2.0+))))
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(license license:lgpl2.0+))))
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(define-public r-singlet
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(let ((commit "765a6c45081807a1522f0e8983e2417822a36f36")
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(revision "1"))
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(package
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(name "r-singlet")
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(version (git-version "0.99.26" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/zdebruine/singlet")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"040v8wzl9qr8ribr6qss61fz4698d14cqs8nxbc8hqwiqlpy3vs4"))))
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(properties `((upstream-name . "singlet")))
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(build-system r-build-system)
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(propagated-inputs (list r-dplyr
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r-fgsea
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r-ggplot2
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r-knitr
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r-limma
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r-matrix
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r-msigdbr
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r-rcpp
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r-rcppml/devel
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r-reshape2
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r-scuttle
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r-seurat))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/zdebruine/singlet")
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(synopsis "Non-negative Matrix Factorization for single-cell analysis")
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(description
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"This is a package for fast @dfn{Non-negative Matrix
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Factorization} (NMF) with automatic rank-determination for dimension reduction
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of single-cell data using Seurat, RcppML nmf, SingleCellExperiments and
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similar.")
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(license license:gpl2+))))
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(define-public r-stringendo
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(define-public r-stringendo
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(let ((commit "83b8f2d82a09b33b9e895438bb523a021138be01")
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(let ((commit "83b8f2d82a09b33b9e895438bb523a021138be01")
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(revision "1"))
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(revision "1"))
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