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gnu: Add r-bioconcotk.
* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
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@ -7204,3 +7204,46 @@ (define-public r-multiassayexperiment
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classes for individual assays, and allowing subsetting by genomic ranges or
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classes for individual assays, and allowing subsetting by genomic ranges or
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rownames.")
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rownames.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-bioconcotk
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(package
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(name "r-bioconcotk")
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(version "1.6.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "BiocOncoTK" version))
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(sha256
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(base32
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"0rnah6c01a33yb9663jim9iclan61rpcwprb56mykgn1pf5hywbj"))))
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(properties `((upstream-name . "BiocOncoTK")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-bigrquery" ,r-bigrquery)
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("r-car" ,r-car)
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("r-complexheatmap" ,r-complexheatmap)
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("r-curatedtcgadata" ,r-curatedtcgadata)
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("r-dbi" ,r-dbi)
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("r-dplyr" ,r-dplyr)
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("r-dt" ,r-dt)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-ggpubr" ,r-ggpubr)
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("r-graph" ,r-graph)
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("r-httr" ,r-httr)
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("r-iranges" ,r-iranges)
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("r-magrittr" ,r-magrittr)
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("r-plyr" ,r-plyr)
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("r-rgraphviz" ,r-rgraphviz)
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("r-rjson" ,r-rjson)
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("r-s4vectors" ,r-s4vectors)
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("r-scales" ,r-scales)
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("r-shiny" ,r-shiny)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(home-page "https://bioconductor.org/packages/BiocOncoTK")
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(synopsis "Bioconductor components for general cancer genomics")
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(description
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"The purpose of this package is to provide a central interface to various
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tools for genome-scale analysis of cancer studies.")
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(license license:artistic2.0)))
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