gnu: Add r-scdblfinder.

* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
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Ricardo Wurmus 2021-12-02 10:02:54 +01:00
parent bef86fed3e
commit c2c63a00de
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@ -4193,6 +4193,46 @@ (define-public r-samr
;; Any version of the LGPL
(license license:lgpl3+)))
(define-public r-scdblfinder
(package
(name "r-scdblfinder")
(version "1.8.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scDblFinder" version))
(sha256
(base32 "0wzmmcsnjybgzbc5rn4i72n26j9n59dfy1zg8ij0q8p4276jplsd"))))
(properties `((upstream-name . "scDblFinder")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biocneighbors" ,r-biocneighbors)
("r-biocparallel" ,r-biocparallel)
("r-biocsingular" ,r-biocsingular)
("r-bluster" ,r-bluster)
("r-delayedarray" ,r-delayedarray)
("r-igraph" ,r-igraph)
("r-mass" ,r-mass)
("r-matrix" ,r-matrix)
("r-s4vectors" ,r-s4vectors)
("r-scater" ,r-scater)
("r-scran" ,r-scran)
("r-scuttle" ,r-scuttle)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-xgboost" ,r-xgboost)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/plger/scDblFinder")
(synopsis "Detect multiplets in single-cell RNA sequencing data")
(description
"The scDblFinder package gathers various methods for the detection and
handling of doublets/multiplets in single-cell RNA sequencing data (i.e.
multiple cells captured within the same droplet or reaction volume). It
includes methods formerly found in the scran package, and the new fast and
comprehensive scDblFinder method.")
(license license:gpl3)))
(define-public r-seqlogo
(package
(name "r-seqlogo")