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gnu: Add r-scdblfinder.
* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
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@ -4193,6 +4193,46 @@ (define-public r-samr
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;; Any version of the LGPL
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;; Any version of the LGPL
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(license license:lgpl3+)))
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(license license:lgpl3+)))
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(define-public r-scdblfinder
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(package
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(name "r-scdblfinder")
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(version "1.8.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "scDblFinder" version))
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(sha256
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(base32 "0wzmmcsnjybgzbc5rn4i72n26j9n59dfy1zg8ij0q8p4276jplsd"))))
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(properties `((upstream-name . "scDblFinder")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biocneighbors" ,r-biocneighbors)
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("r-biocparallel" ,r-biocparallel)
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("r-biocsingular" ,r-biocsingular)
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("r-bluster" ,r-bluster)
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("r-delayedarray" ,r-delayedarray)
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("r-igraph" ,r-igraph)
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("r-mass" ,r-mass)
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("r-matrix" ,r-matrix)
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("r-s4vectors" ,r-s4vectors)
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("r-scater" ,r-scater)
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("r-scran" ,r-scran)
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("r-scuttle" ,r-scuttle)
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("r-singlecellexperiment" ,r-singlecellexperiment)
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("r-summarizedexperiment" ,r-summarizedexperiment)
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("r-xgboost" ,r-xgboost)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/plger/scDblFinder")
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(synopsis "Detect multiplets in single-cell RNA sequencing data")
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(description
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"The scDblFinder package gathers various methods for the detection and
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handling of doublets/multiplets in single-cell RNA sequencing data (i.e.
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multiple cells captured within the same droplet or reaction volume). It
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includes methods formerly found in the scran package, and the new fast and
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comprehensive scDblFinder method.")
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(license license:gpl3)))
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(define-public r-seqlogo
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(define-public r-seqlogo
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(package
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(package
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(name "r-seqlogo")
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(name "r-seqlogo")
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