mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-12-29 07:42:23 -05:00
gnu: Remove pyicoteo.
* gnu/packages/bioinformatics.scm (pyicoteo): Delete variable.
This commit is contained in:
parent
ba09192168
commit
c30ab2c0b4
1 changed files with 0 additions and 39 deletions
|
@ -5406,45 +5406,6 @@ (define-public proteinortho
|
|||
large-scale data and can be applied to hundreds of species at once.")
|
||||
(license license:gpl3+)))
|
||||
|
||||
(define-public pyicoteo
|
||||
(package
|
||||
(name "pyicoteo")
|
||||
(version "2.0.7")
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://bitbucket.org/regulatorygenomicsupf/pyicoteo.git")
|
||||
(commit (string-append "v" version))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"0hz5g8d25lbjy1wpscr490l0lmyvaix893hhax4fxnh1h9w34w8p"))))
|
||||
(build-system python-build-system)
|
||||
(arguments
|
||||
`(#:python ,python-2 ; does not work with Python 3
|
||||
#:tests? #f)) ; there are no tests
|
||||
(inputs
|
||||
(list python2-matplotlib))
|
||||
(home-page "https://bitbucket.org/regulatorygenomicsupf/pyicoteo")
|
||||
(synopsis "Analyze high-throughput genetic sequencing data")
|
||||
(description
|
||||
"Pyicoteo is a suite of tools for the analysis of high-throughput genetic
|
||||
sequencing data. It works with genomic coordinates. There are currently six
|
||||
different command-line tools:
|
||||
|
||||
@enumerate
|
||||
@item pyicoregion: for generating exploratory regions automatically;
|
||||
@item pyicoenrich: for differential enrichment between two conditions;
|
||||
@item pyicoclip: for calling CLIP-Seq peaks without a control;
|
||||
@item pyicos: for genomic coordinates manipulation;
|
||||
@item pyicoller: for peak calling on punctuated ChIP-Seq;
|
||||
@item pyicount: to count how many reads from N experiment files overlap in a
|
||||
region file;
|
||||
@item pyicotrocol: to combine operations from pyicoteo.
|
||||
@end enumerate\n")
|
||||
(license license:gpl3+)))
|
||||
|
||||
(define-public prodigal
|
||||
(package
|
||||
(name "prodigal")
|
||||
|
|
Loading…
Reference in a new issue