ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-12-24 05:18:07 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: Add r-hitc.

Browse source 
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
This commit is contained in:
Ricardo Wurmus 2017-11-07 17:26:26 +01:00
parent 30eb4e37c8
commit c49102ecca
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
1 changed files with 29 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

29
gnu/packages/bioinformatics.scm
View file

@ -10166,6 +10166,35 @@ (define-public r-fithic
assays such as Hi-C.")
(license license:gpl2+)))
(define-public r-hitc
(package
(name "r-hitc")
(version "1.22.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "HiTC" version))
(sha256
(base32
"0288xa1jy6nzvz2ha07csmp6dirjw5r7p9vy69q2wsbyzr02ymkp"))))
(properties `((upstream-name . "HiTC")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rtracklayer" ,r-rtracklayer)))
(home-page "https://bioconductor.org/packages/HiTC")
(synopsis "High throughput chromosome conformation capture analysis")
(description
"The HiTC package was developed to explore high-throughput \"C\" data
such as 5C or Hi-C. Dedicated R classes as well as standard methods for
quality controls, normalization, visualization, and further analysis are also
provided.")
(license license:artistic2.0)))
(define-public r-qvalue
(package
(name "r-qvalue")