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gnu: Add python-pymc.
* gnu/packages/statistics.scm (python-pymc): New variable.
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@ -2173,6 +2173,63 @@ (define-public python-arviz
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comparison and diagnostics.")
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comparison and diagnostics.")
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(license license:asl2.0)))
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(license license:asl2.0)))
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(define-public python-pymc
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(package
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(name "python-pymc")
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(version "5.5.0")
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(source (origin
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(method git-fetch) ; no tests in PyPI
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(uri (git-reference
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(url "https://github.com/pymc-devs/pymc")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"077xigv3lfcn9fqc14rsnam4v95fmqk2wpzfrgj08vg8m7f69wdj"))))
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(build-system pyproject-build-system)
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(arguments
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(list #:tests? #f ; tests are too computationally intensive
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#:phases #~(modify-phases %standard-phases
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(add-after 'unpack 'versioneer
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(lambda _
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(with-output-to-file "setup.cfg"
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(lambda ()
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(display "\
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[versioneer]
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VCS = git
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style = pep440
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versionfile_source = pymc/_version.py
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versionfile_build = pymc/_version.py
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tag_prefix =
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parentdir_prefix = pymc-
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")))
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(invoke "versioneer" "install")
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(substitute* "setup.py"
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(("versioneer.get_version\\(\\)")
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(string-append "\"" #$version "\"")))))
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;; To create the compiledir for tests.
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(add-before 'check 'write-permissions
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(lambda* (#:key tests? #:allow-other-keys)
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(when tests?
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(setenv "HOME" "/tmp")))))))
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(native-inputs (list python-pytest-cov python-versioneer))
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(propagated-inputs (list python-arviz
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python-cachetools
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python-cloudpickle
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python-fastprogress
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python-numpy
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python-pandas
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python-pytensor
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python-scipy
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python-typing-extensions))
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(home-page "https://github.com/pymc-devs/pymc")
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(synopsis "Library for probabilistic programming in Python")
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(description
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"PyMC (formerly PyMC3) is a Python package for Bayesian statistical
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modeling focusing on advanced Markov chain Monte Carlo (MCMC) and variational
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inference (VI) algorithms.")
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(license license:asl2.0)))
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(define-public python-patsy
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(define-public python-patsy
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(package
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(package
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(name "python-patsy")
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(name "python-patsy")
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