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gnu: python-cooler: Update to 0.8.7.

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* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.8.7.
[propagated-inputs]: Add python-asciitree, python-numpy, python-pyyaml, and
python-simplejson.
[native-inputs]: Remove python-nose, python-numpydoc, and python-sphinx; add
python-pytest.
This commit is contained in:
Ricardo Wurmus 2020-04-17 15:49:19 +02:00
parent 4a085ffc16
commit c55beaecd8
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GPG key ID: 197A5888235FACAC
1 changed files with 9 additions and 7 deletions
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gnu/packages/bioinformatics.scm
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@ -13641,32 +13641,34 @@ (define-public python2-pyfaidx
(define-public python-cooler
(package
(name "python-cooler")
(version "0.7.11")
(version "0.8.7")
(source
(origin
(method url-fetch)
(uri (pypi-uri "cooler" version))
(sha256
(base32
"08k5nxnxa6qsbk15z5z0q01n28042k87wi4905hh95rzqib15mhx"))))
"01g6gqix9ba27sappz6nfyiwabzrlf8i5fn8kwcz8ra356cq9crp"))))
(build-system python-build-system)
(propagated-inputs
`(("python-biopython" ,python-biopython)
`(("python-asciitree" ,python-asciitree)
("python-biopython" ,python-biopython)
("python-click" ,python-click)
("python-cytoolz" ,python-cytoolz)
("python-dask" ,python-dask)
("python-h5py" ,python-h5py)
("python-multiprocess" ,python-multiprocess)
("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-pyfaidx" ,python-pyfaidx)
("python-pypairix" ,python-pypairix)
("python-pysam" ,python-pysam)
("python-scipy" ,python-scipy)))
("python-pyyaml" ,python-pyyaml)
("python-scipy" ,python-scipy)
("python-simplejson" ,python-simplejson)))
(native-inputs
`(("python-mock" ,python-mock)
("python-nose" ,python-nose)
("python-numpydoc" ,python-numpydoc)
("python-sphinx" ,python-sphinx)))
("python-pytest" ,python-pytest)))
(home-page "https://github.com/mirnylab/cooler")
(synopsis "Sparse binary format for genomic interaction matrices")
(description