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gnu: minimap2: Install more files.

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* gnu/packages/bioinformatics.scm (minimap2)[arguments]: Add modules.
Adjust custom 'install phase to also install library, headers and a
pkg-config file.
This commit is contained in:
Efraim Flashner 2021-05-26 13:42:26 +03:00
parent 36a90d0637
commit c5f7203e3e
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GPG key ID: 41AAE7DCCA3D8351
1 changed files with 25 additions and 2 deletions
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27
gnu/packages/bioinformatics.scm
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@ -12336,6 +12336,9 @@ (define-public minimap2
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:tests? #f ; there are none `(#:tests? #f ; there are none
#:modules ((guix build utils)
(guix build gnu-build-system)
(srfi srfi-26))
#:make-flags #:make-flags
(list (string-append "CC=" ,(cc-for-target)) (list (string-append "CC=" ,(cc-for-target))
(let ((system ,(or (%current-target-system) (let ((system ,(or (%current-target-system)
@ -12358,10 +12361,30 @@ (define-public minimap2
(lambda* (#:key outputs #:allow-other-keys) (lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out")) (let* ((out (assoc-ref outputs "out"))
(bin (string-append out "/bin")) (bin (string-append out "/bin"))
(lib (string-append out "/lib"))
(inc (string-append out "/include"))
(man (string-append out "/share/man/man1"))) (man (string-append out "/share/man/man1")))
(install-file "minimap2" bin) (install-file "minimap2" bin)
(mkdir-p man) (install-file "libminimap2.a" lib)
(install-file "minimap2.1" man)) (install-file "minimap2.1" man)
(map (cut install-file <> inc)
(find-files "." "\\.h$"))
;; Not this file.
(delete-file (string-append inc "/emmintrin.h"))
(mkdir-p (string-append lib "/pkgconfig"))
(with-output-to-file (string-append lib "/pkgconfig/minimap2.pc")
(lambda _
(format #t "prefix=~a~@
exec_prefix=${prefix}~@
libdir=${exec_prefix}/lib~@
includedir=${prefix}/include~@
~@
Name: libminimap2~@
Version: ~a~@
Description: A versatile pairwise aligner for genomic and spliced nucleotide sequence~@
Libs: -L${libdir} -lminimap2~@
Cflags: -I${includedir}~%"
out ,version))))
#t))))) #t)))))
(inputs (inputs
`(("zlib" ,zlib))) `(("zlib" ,zlib)))