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gnu: Add r-amaretto.
* gnu/packages/bioconductor.scm (r-amaretto): New variable.
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@ -2011,6 +2011,58 @@ (define-public r-amountain
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in multi-layer WGCN using a continuous optimization approach.")
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(license license:gpl2+)))
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(define-public r-amaretto
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(package
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(name "r-amaretto")
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(version "1.12.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "AMARETTO" version))
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(sha256
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(base32
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"111dk19b9910icksyr592cvhc5gwvgknr5q4887j9yxbajd7hcmx"))))
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(properties `((upstream-name . "AMARETTO")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-biocfilecache
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r-callr
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r-circlize
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r-complexheatmap
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r-curatedtcgadata
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r-doparallel
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r-dplyr
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r-dt
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r-foreach
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r-ggplot2
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r-glmnet
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r-gridextra
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r-httr
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r-impute
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r-knitr
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r-limma
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r-matrix
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r-matrixstats
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r-multiassayexperiment
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r-rcpp
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r-readr
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r-reshape2
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r-rmarkdown
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r-tibble))
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(native-inputs (list r-knitr))
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(home-page "https://bioconductor.org/packages/AMARETTO")
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(synopsis "Regulatory network inference and driver gene evaluation")
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(description
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"This package @code{AMARETTO} represents an algorithm that integrates copy
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number, DNA methylation and gene expression data to identify a set of driver
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genes by analyzing cancer samples and connects them to clusters of co-expressed
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genes, which we define as modules. @code{AMARETTO} can be applied in a pancancer
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setting to identify cancer driver genes and their modules on multiple cancer
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sites. @code{AMARETTO} captures modules enriched in angiogenesis, cell cycle
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and EMT, and modules that accurately predict survival and molecular subtypes.
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This allows @code{AMARETTO} to identify novel cancer driver genes directing
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canonical cancer pathways.")
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(license license:asl2.0)))
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(define-public r-aneufinder
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(package
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(name "r-aneufinder")
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