gnu: Add r-vcfr.

* gnu/packages/cran.scm (r-vcfr): New variable.
This commit is contained in:
Roel Janssen 2021-05-27 14:26:41 +02:00
parent 32cce42154
commit c8286c8d4a
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@ -5286,6 +5286,44 @@ (define-public r-vcd
Analysis with R\" by Michael Friendly and David Meyer (2015).")
(license license:gpl2)))
(define-public r-vcfr
(package
(name "r-vcfr")
(version "1.12.0")
(source (origin
(method url-fetch)
(uri (cran-uri "vcfR" version))
(sha256
(base32
"0lhxb3ac4fafwik9q3cds46svzf0hyca8k54chw3dpk50c0zz1yx"))))
(build-system r-build-system)
(native-inputs
`(("r-knitr" ,r-knitr)))
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
`(("r-ape" ,r-ape)
("r-dplyr" ,r-dplyr)
("r-magrittr" ,r-magrittr)
("r-memuse" ,r-memuse)
("r-pinfsc50" ,r-pinfsc50)
("r-rcpp" ,r-rcpp)
("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-vegan" ,r-vegan)
("r-viridislite" ,r-viridislite)))
(home-page "https://github.com/knausb/vcfR")
(synopsis "Manipulate and visualize VCF data")
(description "This package facilitates easy manipulation of variant call
format (VCF) data. Functions are provided to rapidly read from and write to
VCF files. Once VCF data is read into R, a parser function extracts matrices
of data. This information can then be used for quality control or other
purposes. Additional functions provide visualization of genomic data. Once
processing is complete data may be written to a VCF file. It also may be
converted into other popular R objects. This package provides a link between
VCF data and familiar R software.")
(license license:gpl3)))
(define-public r-ica
(package
(name "r-ica")