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gnu: r-chromvarmotifs: Move to (gnu packages bioinformatics).

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* gnu/packages/bioconductor.scm (r-chromvarmotifs): Move this variable from here...
* gnu/packages/bioinformatics.scm (r-chromvarmotifs): ...to here.
This commit is contained in:
Ricardo Wurmus 2022-04-14 13:35:22 +02:00
parent aafd0d2309
commit c8a6e4abbc
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2 changed files with 28 additions and 28 deletions
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28
gnu/packages/bioconductor.scm
View file

@ -1211,34 +1211,6 @@ (define-public r-chromstardata
chromstaR package.")
(license license:gpl3)))
(define-public r-chromvarmotifs
(let ((commit "38bed559c1f4770b6c91c80bf3f8ea965da26076")
(revision "1"))
(package
(name "r-chromvarmotifs")
(version (git-version "0.2.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/GreenleafLab/chromVARmotifs")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0i9v1m1hrg1lkd2pnkj5nnrpks6vhhhpbdhsfl2lmjak4npxxr5q"))))
(properties `((upstream-name . "chromVARmotifs")))
(build-system r-build-system)
(propagated-inputs
`(("r-tfbstools" ,r-tfbstools)))
(home-page "https://github.com/GreenleafLab/chromVARmotifs")
(synopsis "Stores motif collections for use with motifmatchr or chromVAR")
(description
"This package stores motif collections as lists of @dfn{position
frequency matrix} (PWMatrixList) objects provided by the @code{TFBSTools}
package for use in R with packages like @code{motifmatchr} or
@code{chromVAR}.")
(license license:expat))))
(define-public r-copyhelper
(package
(name "r-copyhelper")

28
gnu/packages/bioinformatics.scm
View file

@ -8981,6 +8981,34 @@ (define-public variant-tools
manipulate and analyze genetic variants.")
(license license:gpl3+)))
(define-public r-chromvarmotifs
(let ((commit "38bed559c1f4770b6c91c80bf3f8ea965da26076")
(revision "1"))
(package
(name "r-chromvarmotifs")
(version (git-version "0.2.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/GreenleafLab/chromVARmotifs")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0i9v1m1hrg1lkd2pnkj5nnrpks6vhhhpbdhsfl2lmjak4npxxr5q"))))
(properties `((upstream-name . "chromVARmotifs")))
(build-system r-build-system)
(propagated-inputs
`(("r-tfbstools" ,r-tfbstools)))
(home-page "https://github.com/GreenleafLab/chromVARmotifs")
(synopsis "Stores motif collections for use with motifmatchr or chromVAR")
(description
"This package stores motif collections as lists of @dfn{position
frequency matrix} (PWMatrixList) objects provided by the @code{TFBSTools}
package for use in R with packages like @code{motifmatchr} or
@code{chromVAR}.")
(license license:expat))))
(define-public r-raremetals2
(package
(name "r-raremetals2")