gnu: Add r-karyoploter.

* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
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Roel Janssen 2020-04-27 10:37:42 +02:00
parent e658838c62
commit cb1ab0352b
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@ -2583,6 +2583,41 @@ (define-public r-ebseq
gene and isoform level using RNA-seq data") gene and isoform level using RNA-seq data")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-karyoploter
(package
(name "r-karyoploter")
(version "1.12.4")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "karyoploteR" version))
(sha256
(base32
"03jmfgmw35hrgn3pc5lq6pblzhfx9fp4l6dx50rp303lr7kjxp9v"))))
(build-system r-build-system)
(propagated-inputs
`(("r-regioner" ,r-regioner)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rsamtools" ,r-rsamtools)
("r-memoise" ,r-memoise)
("r-rtracklayer" ,r-rtracklayer)
("r-genomeinfodb" ,r-genomeinfodb)
("r-s4vectors" ,r-s4vectors)
("r-biovizbase" ,r-biovizbase)
("r-digest" ,r-digest)
("r-bezier" ,r-bezier)
("r-bamsignals" ,r-bamsignals)
("r-annotationdbi" ,r-annotationdbi)
("r-variantannotation" ,r-variantannotation)))
(home-page "https://bioconductor.org/packages/karyoploteR/")
(synopsis "Plot customizable linear genomes displaying arbitrary data")
(description "This package creates karyotype plots of arbitrary genomes and
offers a complete set of functions to plot arbitrary data on them. It mimicks
many R base graphics functions coupling them with a coordinate change function
automatically mapping the chromosome and data coordinates into the plot
coordinates.")
(license license:artistic2.0)))
(define-public r-lpsymphony (define-public r-lpsymphony
(package (package
(name "r-lpsymphony") (name "r-lpsymphony")