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gnu: Add r-karyoploter.
* gnu/packages/bioconductor.scm (r-karyoploter): New variable.
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@ -2583,6 +2583,41 @@ (define-public r-ebseq
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gene and isoform level using RNA-seq data")
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gene and isoform level using RNA-seq data")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-karyoploter
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(package
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(name "r-karyoploter")
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(version "1.12.4")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "karyoploteR" version))
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(sha256
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(base32
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"03jmfgmw35hrgn3pc5lq6pblzhfx9fp4l6dx50rp303lr7kjxp9v"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-regioner" ,r-regioner)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-rsamtools" ,r-rsamtools)
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("r-memoise" ,r-memoise)
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("r-rtracklayer" ,r-rtracklayer)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-s4vectors" ,r-s4vectors)
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("r-biovizbase" ,r-biovizbase)
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("r-digest" ,r-digest)
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("r-bezier" ,r-bezier)
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("r-bamsignals" ,r-bamsignals)
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("r-annotationdbi" ,r-annotationdbi)
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("r-variantannotation" ,r-variantannotation)))
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(home-page "https://bioconductor.org/packages/karyoploteR/")
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(synopsis "Plot customizable linear genomes displaying arbitrary data")
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(description "This package creates karyotype plots of arbitrary genomes and
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offers a complete set of functions to plot arbitrary data on them. It mimicks
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many R base graphics functions coupling them with a coordinate change function
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automatically mapping the chromosome and data coordinates into the plot
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coordinates.")
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(license license:artistic2.0)))
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(define-public r-lpsymphony
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(define-public r-lpsymphony
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(package
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(package
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(name "r-lpsymphony")
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(name "r-lpsymphony")
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