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gnu: Add python-deeptools.
* gnu/packages/bioinformatics.scm (python-deeptools): New variable.
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@ -3,7 +3,7 @@
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;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
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;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl>
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;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
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;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2016, 2020 Roel Janssen <roel@gnu.org>
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;;; Copyright © 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il>
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;;; Copyright © 2016, 2020 Marius Bakke <mbakke@fastmail.com>
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;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com>
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@ -2355,6 +2355,41 @@ (define-public python-deeptoolsintervals
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@code{deeptools} package.")
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(license license:expat)))
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(define-public python-deeptools
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(package
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(name "python-deeptools")
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(version "3.4.3")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "deepTools" version))
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(sha256
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(base32
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"1azgjniss5ff6a90nicdjkxyjwqmi3gzfn09gra42hwlz19hipxb"))))
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(build-system python-build-system)
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(propagated-inputs
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`(("python-matplotlib" ,python-matplotlib)
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("python-numpy" ,python-numpy)
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("python-numpydoc" ,python-numpydoc)
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("python-py2bit" ,python-py2bit)
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("python-pybigwig" ,python-pybigwig)
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("python-pysam" ,python-pysam)
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("python-scipy" ,python-scipy)
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("python-deeptoolsintervals" ,python-deeptoolsintervals)
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("python-plotly" ,python-plotly)))
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(home-page "https://pypi.org/project/deepTools/")
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(synopsis "Useful tools for exploring deep sequencing data")
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(description "This package addresses the challenge of handling large amounts
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of data that are now routinely generated from DNA sequencing centers.
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@code{deepTools} contains useful modules to process the mapped reads data for
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multiple quality checks, creating normalized coverage files in standard bedGraph
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and bigWig file formats, that allow comparison between different files. Finally,
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using such normalized and standardized files, deepTools can create many
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publication-ready visualizations to identify enrichments and for functional
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annotations of the genome.")
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;; The file deeptools/cm.py is licensed under the BSD license. The
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;; remainder of the code is licensed under the MIT license.
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(license (list license:bsd-3 license:expat))))
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(define-public cutadapt
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(package
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(name "cutadapt")
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