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gnu: python2-pysnptools: Update to 0.4.11.
* gnu/packages/python-xyz.scm (python2-pysnptools): Update to 0.4.11; implement in terms of... (python-pysnptools): ...this new variable. [propagated-inputs]: Add python-dill, python-h5py, and python-psutil.
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1 changed files with 24 additions and 10 deletions
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@ -4876,27 +4876,38 @@ (define-public python-matplotlib-venn
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three-way Venn diagrams in @code{matplotlib}.")
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(license license:expat)))
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(define-public python2-pysnptools
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(define-public python-pysnptools
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(package
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(name "python2-pysnptools")
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(version "0.3.13")
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(name "python-pysnptools")
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(version "0.4.11")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "pysnptools" version))
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(sha256
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(base32
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"0lnis5xsl7bi0hz4f7gbicahzi5zlxkc21nk3g374xv8fb5hb3qm"))))
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"0gxr0bjix307wvk0qh7vkafbxbzfpdmq0wlswpxyyaymy0fwcypv"))))
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(build-system python-build-system)
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(arguments
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`(#:python ,python-2 ; only Python 2.7 is supported
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#:tests? #f)) ; test files (e.g. examples/toydata.bim) not included
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`(#:tests? #f ; no test data are included
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#:phases
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(modify-phases %standard-phases
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(replace 'check
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(lambda* (#:key inputs outputs tests? #:allow-other-keys)
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(if tests?
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(begin
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(add-installed-pythonpath inputs outputs)
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(invoke "python3" "pysnptools/test.py"))
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#t))))))
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(propagated-inputs
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`(("python2-numpy" ,python2-numpy)
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("python2-scipy" ,python2-scipy)
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("python2-pandas" ,python2-pandas)))
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`(("python-dill" ,python-dill)
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("python-h5py" ,python-h5py)
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("python-numpy" ,python-numpy)
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("python-pandas" ,python-pandas)
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("python-psutil" ,python-psutil)
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("python-scipy" ,python-scipy)))
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(native-inputs
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`(("python2-cython" ,python2-cython)))
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`(("python-cython" ,python-cython)))
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(home-page "http://microsoftgenomics.github.io/PySnpTools/")
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(synopsis "Library for reading and manipulating genetic data")
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(description
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@ -4906,6 +4917,9 @@ (define-public python2-pysnptools
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operators such as union, intersection, and difference.")
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(license license:asl2.0)))
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(define-public python2-pysnptools
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(package-with-python2 python-pysnptools))
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(define-public python-socksipy-branch
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(package
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(name "python-socksipy-branch")
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