diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 3daec56401..eab73f7f05 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4497,19 +4497,17 @@ (define-public r-mzid (define-public r-mzr (package (name "r-mzr") - (version "2.28.0") + (version "2.30.0") (source (origin (method url-fetch) (uri (bioconductor-uri "mzR" version)) (sha256 (base32 - "1azq0wjjy6n5xc721gjz6afm43ajz15b4p34vgsdjzwg9qn1vrs1")) + "1dqa03hb42kbqfg15ksijdkyf9pr54gcl3in4mzjkld5sdi8ncds")) (modules '((guix build utils))) (snippet - '(begin - (delete-file-recursively "src/boost") - #t)))) + '(delete-file-recursively "src/boost")))) (properties `((upstream-name . "mzR"))) (build-system r-build-system) (arguments @@ -4523,12 +4521,9 @@ (define-public r-mzr (("\\ARCH_OBJS=" line) (string-append line "\nBOOST_LIBS=-lboost_system -lboost_regex \ --lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n"))) - #t))))) +-lboost_iostreams -lboost_thread -lboost_filesystem -lboost_chrono\n")))))))) (inputs - (list ;; Our default boost package won't work here, unfortunately, even with - ;; mzR version 2.28.0. - boost-for-mysql ; use this instead of the bundled boost sources + (list boost ; use this instead of the bundled boost sources zlib)) (propagated-inputs (list r-biobase @@ -4536,8 +4531,7 @@ (define-public r-mzr r-ncdf4 r-protgenerics r-rcpp - r-rhdf5lib - r-zlibbioc)) + r-rhdf5lib)) (native-inputs (list r-knitr)) (home-page "https://github.com/sneumann/mzR/")