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gnu: Add r-txdb-mmusculus-ucsc-mm9-knowngene.

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* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm9-knowngene): New
variable.
This commit is contained in:
Ricardo Wurmus 2019-01-12 23:23:20 +01:00
parent cad6fb2dec
commit d220babf34
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1 changed files with 30 additions and 0 deletions
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gnu/packages/bioconductor.scm
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@ -197,6 +197,36 @@ (define-public r-genelendatabase
genomes and gene ID formats, largely based on the UCSC table browser.")
(license license:lgpl2.0+)))
(define-public r-txdb-mmusculus-ucsc-mm9-knowngene
(package
(name "r-txdb-mmusculus-ucsc-mm9-knowngene")
(version "3.2.2")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://bioconductor.org/packages/"
"release/data/annotation/src/contrib"
"/TxDb.Mmusculus.UCSC.mm9.knownGene_"
version ".tar.gz"))
(sha256
(base32
"16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"))))
(properties
`((upstream-name . "TxDb.Mmusculus.UCSC.mm9.knownGene")))
(build-system r-build-system)
(propagated-inputs
`(("r-genomicfeatures" ,r-genomicfeatures)
("r-annotationdbi" ,r-annotationdbi)))
(home-page
"https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm9.knownGene/")
(synopsis "Annotation package for mouse genome in TxDb format")
(description
"This package provides an annotation database of Mouse genome data. It
is derived from the UCSC mm9 genome and based on the \"knownGene\" track. The
database is exposed as a @code{TxDb} object.")
(license license:artistic2.0)))
(define-public r-hpar
(package