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gnu: Add hdf-eos2.

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* gnu/packages/maths.scm (hdf-eos2): New variable.
* gnu/packages/patches/hdf-eos2-build-shared.patch: New file.
* gnu/packages/patches/hdf-eos2-remove-gctp.patch: New file.
* gnu/packages/patches/hdf-eos2-fortrantests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patches.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
This commit is contained in:
Thomas Danckaert 2016-09-30 09:59:08 +02:00 committed by Ludovic Courtès
parent 3b5783fcd9
commit d3c4f3bb00
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3
gnu/local.mk
View file

@ -590,6 +590,9 @@ dist_patch_DATA = \
%D%/packages/patches/hdf4-reproducibility.patch \
%D%/packages/patches/hdf4-shared-fortran.patch \
%D%/packages/patches/hdf5-config-date.patch \
%D%/packages/patches/hdf-eos2-build-shared.patch \
%D%/packages/patches/hdf-eos2-remove-gctp.patch \
%D%/packages/patches/hdf-eos2-fortrantests.patch \
%D%/packages/patches/hdf-eos5-build-shared.patch \
%D%/packages/patches/hdf-eos5-remove-gctp.patch \
%D%/packages/patches/hdf-eos5-fix-szip.patch \

35
gnu/packages/maths.scm
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@ -544,6 +544,41 @@ (define-public hdf5
(license (license:x11-style
"http://www.hdfgroup.org/ftp/HDF5/current/src/unpacked/COPYING"))))
(define-public hdf-eos2
(package
(name "hdf-eos2")
(version "19.1.0")
(source
(origin
(method url-fetch)
(uri "ftp://edhs1.gsfc.nasa.gov\
/edhs/hdfeos/latest_release/HDF-EOS2.19v1.00.tar.Z")
(sha256
(base32 "0c9fcz25s292ldap12wxmlrvnyz99z24p63d8fwx51bf8s0s1zrz"))
(patches (search-patches "hdf-eos2-remove-gctp.patch"
"hdf-eos2-build-shared.patch"
"hdf-eos2-fortrantests.patch"))))
(build-system gnu-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(inputs
`(("hdf4" ,hdf4-alt) ; assume most HDF-EOS2 users won't use the HDF4 netCDF API
("zlib" ,zlib)
("libjpeg" ,libjpeg)
("gctp" ,gctp)))
(arguments
`( #:configure-flags '("--enable-install-include" "--enable-shared"
"CC=h4cc -Df2cFortran" "LIBS=-lgctp")
#:parallel-tests? #f))
(home-page "http://hdfeos.org/software/library.php#HDF-EOS2")
(synopsis "HDF4-based data format for NASA's Earth Observing System")
(description "HDF-EOS2 is a software library built on HDF4 which supports
the construction of data structures used in NASA's Earth Observing
System (Grid, Point and Swath).")
;; Source files carry a permissive license header.
(license (license:non-copyleft home-page))))
(define-public hdf-eos5
(package
(name "hdf-eos5")

25
gnu/packages/patches/hdf-eos2-build-shared.patch Normal file
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@ -0,0 +1,25 @@
Changes necessary for shared library linking to succeed.
diff --git a/src/Makefile.in b/src/Makefile.in
index 9534473..12411bf 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -73,7 +73,7 @@ LTCOMPILE = $(LIBTOOL) --mode=compile --tag=CC $(CC) $(DEFS) \
$(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) \
$(AM_CFLAGS) $(CFLAGS)
CCLD = $(CC)
-LINK = $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
+LINK = HDF4_USE_SHLIB=yes $(LIBTOOL) --mode=link --tag=CC $(CCLD) $(AM_CFLAGS) $(CFLAGS) \
$(AM_LDFLAGS) $(LDFLAGS) -o $@
SOURCES = $(libhdfeos_la_SOURCES)
DIST_SOURCES = $(libhdfeos_la_SOURCES)
@@ -125,8 +125,6 @@ INSTALL_PROGRAM = @INSTALL_PROGRAM@
INSTALL_SCRIPT = @INSTALL_SCRIPT@
INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@
-# Set LDFLAGS to alow the HDF-EOS library to use extern variables from HDF4
-LDFLAGS = -Wl,-single_module
LIBOBJS = @LIBOBJS@
LIBS = @LIBS@
LIBTOOL = @LIBTOOL@

329
gnu/packages/patches/hdf-eos2-fortrantests.patch Normal file
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@ -0,0 +1,329 @@
Fix multi-line string formatting in fortran test programs (reported upstream).
diff --git a/samples/appendfield.f b/samples/appendfield.f
index 42c4b6b..58257f7 100644
--- a/samples/appendfield.f
+++ b/samples/appendfield.f
@@ -22,8 +22,8 @@ c
inarray(i) = i
enddo
- swfid = swopen("SwathFile_created_with_hadeos_sample_file_writer_o
- 1f_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ swfid = swopen("SwathFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
swid = swattach(swfid, "Swath1")
diff --git a/samples/definefields.f b/samples/definefields.f
index 89859e4..f3b3497 100644
--- a/samples/definefields.f
+++ b/samples/definefields.f
@@ -24,8 +24,8 @@ c DFACC_RDWR accesscode in the open statement. The SWopen
c routine returns the swath fileid, swfid, which is used to
c identify the file in subsequent routines.
- swfid = swopen("SwathFile_created_with_hadeos_sample_file_writer
- 1_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ swfid = swopen("SwathFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
c
diff --git a/samples/definegdflds.f b/samples/definegdflds.f
index 177422e..1b7fcf6 100644
--- a/samples/definegdflds.f
+++ b/samples/definegdflds.f
@@ -21,8 +21,8 @@
fillval1=-7.0
fillval2=-9999.0
- gdfid = gdopen("GridFile_created_with_hadeos_sample_file_writer_
- 1of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ gdfid = gdopen("GridFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
gdid1 = gdattach(gdfid, "UTMGrid")
diff --git a/samples/definelevels.f b/samples/definelevels.f
index 2496d5f..64b2842 100644
--- a/samples/definelevels.f
+++ b/samples/definelevels.f
@@ -32,8 +32,8 @@ c DFACC_RDWR access code in the open statement. The ptopen
c routine returns the point fileid, ptfid, which is used to
c identify the file in subsequent routines.
- ptfid = ptopen("PointFile_created_with_hadeos_sample_file_writer
- 1_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ ptfid = ptopen("PointFile_created_with_hadeos_sample_file_write"//
+ 1 "r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
c
diff --git a/samples/inquiregrid.f b/samples/inquiregrid.f
index 8110461..8ce71e4 100644
--- a/samples/inquiregrid.f
+++ b/samples/inquiregrid.f
@@ -18,8 +18,8 @@
- gdfid = gdopen('GridFile_created_with_hadeos_sample_file_writer_
- 1of_HDFEOS2_version_219_or_higher_release.hdf', DFACC_READ)
+ gdfid = gdopen("GridFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
if (gdfid .ne. -1) then
diff --git a/samples/inquireswath.f b/samples/inquireswath.f
index 899ee59..78c292b 100644
--- a/samples/inquireswath.f
+++ b/samples/inquireswath.f
@@ -24,8 +24,8 @@ c
c Open the Swath File for read only access
c
- swfid = swopen("SwathFile_created_with_hadeos_sample_file_writer
- 1_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
+ swfid = swopen("SwathFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
if (swfid .NE. -1) then
diff --git a/samples/readdimscalegrid.f b/samples/readdimscalegrid.f
index fed5540..a0bb48a 100644
--- a/samples/readdimscalegrid.f
+++ b/samples/readdimscalegrid.f
@@ -34,8 +34,8 @@
! * id, gdfid, which is used to identify the file in subsequent routines.
! */
- gdfid = gdopen("GridFile_created_with_hadeos_sample_file_writer_
- 1of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ gdfid = gdopen("GridFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
! /*
! * If the grid file cannot be found, gdopen will return -1 for the file
diff --git a/samples/readdimscaleswath.f b/samples/readdimscaleswath.f
index 97b6264..1b61624 100644
--- a/samples/readdimscaleswath.f
+++ b/samples/readdimscaleswath.f
@@ -33,8 +33,8 @@
! * id, swfid, which is used to identify the file in subsequent routines.
! */
- swfid = swopen("SwathFile_created_with_hadeos_sample_file_writer
- 1_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ swfid = swopen("SwathFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
! /*
! * If the swath file cannot be found, swopen will return -1 for the file
diff --git a/samples/readfields.f b/samples/readfields.f
index 873b30a..29d42f0 100644
--- a/samples/readfields.f
+++ b/samples/readfields.f
@@ -21,8 +21,8 @@ c
c Open the HDF swath file, "SwathFile.hdf"
c
- swfid = swopen("SwathFile_created_with_hadeos_sample_file_writer
- 1_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
+ swfid = swopen("SwathFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
if (swfid .NE. -1) then
diff --git a/samples/readgdflds.f b/samples/readgdflds.f
index e5fe85f..ff2bd86 100644
--- a/samples/readgdflds.f
+++ b/samples/readgdflds.f
@@ -9,8 +9,8 @@
integer DFNT_FLOAT32
parameter (DFNT_FLOAT32=5)
- gdfid = gdopen("GridFile_created_with_hadeos_sample_file_writer_
- 1of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ gdfid = gdopen("GridFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
if (gdfid .ne. -1) then
diff --git a/samples/readlevels.f b/samples/readlevels.f
index a7fd033..f349398 100644
--- a/samples/readlevels.f
+++ b/samples/readlevels.f
@@ -36,8 +36,8 @@ c
c Open the HDF swath file, "PointFile.hdf".
c
- ptfid = ptopen("PointFile_created_with_hadeos_sample_file_writer
- 1_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
+ ptfid = ptopen("PointFile_created_with_hadeos_sample_file_write"//
+ + "r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
c
c Read Simple Point
@@ -47,6 +47,8 @@ c
status = ptlevinfo(ptid, 0, fldlist, fldtype, fldorder)
n = ptnrecs(ptid, 0)
+ write(*,*) n
+
do 5 i=1,n
recs(i) = i - 1
5 continue
diff --git a/samples/setupgrid.f b/samples/setupgrid.f
index be5408c..cf4bd04 100644
--- a/samples/setupgrid.f
+++ b/samples/setupgrid.f
@@ -34,8 +34,8 @@ c code in the open statement. The GDopen routine returns the grid
c file id, gdfid, which is used to identify the file in subsequent
c routines in the library.
c
- gdfid = gdopen('GridFile_created_with_hadeos_sample_file_writer_of
- 1_HDFEOS2_version_219_or_higher_release.hdf',DFACC_CREATE)
+ gdfid = gdopen('GridFile_created_with_hadeos_sample_file_writer_"//
+ 1"of_HDFEOS2_version_219_or_higher_release.hdf',DFACC_CREATE)
c
c Create UTM Grid
diff --git a/samples/setupswath.f b/samples/setupswath.f
index d0289d6..fbaa0bb 100644
--- a/samples/setupswath.f
+++ b/samples/setupswath.f
@@ -22,8 +22,8 @@ c code in the open statement. The SWopen routine returns the swath
c file id, swfid, which is used to identify the file in subsequent
c routines in the library.
c
- swfid = swopen('SwathFile_created_with_hadeos_sample_file_writer_o
- 1f_HDFEOS2_version_219_or_higher_release.hdf',DFACC_CREATE)
+ swfid = swopen("SwathFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf",DFACC_CREATE)
c
c The first of these, SWcreate, creates the swath, "Swath1", within the
diff --git a/samples/subsetgrid.f b/samples/subsetgrid.f
index c57e541..087e5b1 100644
--- a/samples/subsetgrid.f
+++ b/samples/subsetgrid.f
@@ -22,8 +22,8 @@ c
c Open the HDF grid file, "GridFile.hdf"
c
- gdfid = gdopen("GridFile_created_with_hadeos_sample_file_writer_
- 1of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
+ gdfid = gdopen("GridFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
if (gdfid .NE. -1) then
diff --git a/samples/subsetpoint.f b/samples/subsetpoint.f
index 9e72c5f..2e76d7d 100644
--- a/samples/subsetpoint.f
+++ b/samples/subsetpoint.f
@@ -21,8 +21,8 @@ c
c Open the HDF point file, "PointFile.hdf"
c
- ptfid = ptopen("PointFile_created_with_hadeos_sample_file_writer
- 1_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
+ ptfid = ptopen("PointFile_created_with_hadeos_sample_file_write"//
+ 1 "r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
if (ptfid .NE. -1) then
diff --git a/samples/subsetswath.f b/samples/subsetswath.f
index dcee609..9af8a46 100644
--- a/samples/subsetswath.f
+++ b/samples/subsetswath.f
@@ -28,8 +28,8 @@ c
c Open the HDF swath file, "SwathFile.hdf"
c
- swfid = swopen("SwathFile_created_with_hadeos_sample_file_writer
- 1_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
+ swfid = swopen("SwathFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_READ)
if (swfid .NE. -1) then
diff --git a/samples/writedimscalegrid.f b/samples/writedimscalegrid.f
index 09688d8..42013fe 100644
--- a/samples/writedimscalegrid.f
+++ b/samples/writedimscalegrid.f
@@ -29,8 +29,8 @@
! * id, gdfid, which is used to identify the file in subsequent routines.
! */
- gdfid = gdopen("GridFile_created_with_hadeos_sample_file_writer_
- 1of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ gdfid = gdopen("GridFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
! /*
! * If the grid file cannot be found, gdopen will return -1 for the file
diff --git a/samples/writedimscaleswath.f b/samples/writedimscaleswath.f
index 1151671..1a911a6 100644
--- a/samples/writedimscaleswath.f
+++ b/samples/writedimscaleswath.f
@@ -31,8 +31,8 @@
! * id, swfid, which is used to identify the file in subsequent routines.
! */
- swfid = swopen("SwathFile_created_with_hadeos_sample_file_write
- 1r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ swfid = swopen("SwathFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
! /*
! * If the swath file cannot be found, swopen will return -1 for the file
diff --git a/samples/writefields.f b/samples/writefields.f
index a743661..862b96c 100644
--- a/samples/writefields.f
+++ b/samples/writefields.f
@@ -31,8 +31,8 @@ c
c Open the HDF swath file, "SwathFile.hdf"
c
- swfid = swopen("SwathFile_created_with_hadeos_sample_file_writer
- 1_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ swfid = swopen("SwathFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
if (swfid .NE. -1) then
diff --git a/samples/writegdflds.f b/samples/writegdflds.f
index d1540b3..81aef75 100644
--- a/samples/writegdflds.f
+++ b/samples/writegdflds.f
@@ -23,8 +23,8 @@
enddo
- gdfid = gdopen("GridFile_created_with_hadeos_sample_file_writer_
- 1of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ gdfid = gdopen("GridFile_created_with_hadeos_sample_file_write"//
+ 1"r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
if (gdfid .ne. -1) then
diff --git a/samples/writelevels.f b/samples/writelevels.f
index 88e7780..cb40c9e 100644
--- a/samples/writelevels.f
+++ b/samples/writelevels.f
@@ -32,8 +32,8 @@ c
c Open the HDF point file, "PointFile.hdf".
c
- ptfid = ptopen("PointFile_created_with_hadeos_sample_file_writer
- 1_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
+ ptfid = ptopen("PointFile_created_with_hadeos_sample_file_write"//
+ + "r_of_HDFEOS2_version_219_or_higher_release.hdf", DFACC_RDWR)
c
--
2.10.0

55
gnu/packages/patches/hdf-eos2-remove-gctp.patch Normal file
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@ -0,0 +1,55 @@
Don't build the GCTP bundled with the source and link with the
system's -lgctp instead. We also remove references to the
"testdrivers" directory, which is not distributed together with the
source, causing autoreconf to fail.
diff --git a/Makefile.in b/Makefile.in
index d468af2..90428a7 100644
--- a/Makefile.in
+++ b/Makefile.in
@@ -206,7 +206,7 @@ LIBGCTP = $(top_builddir)/gctp/src/libGctp.la
@TESTDRIVERS_CONDITIONAL_TRUE@TESTDRIVERS = testdrivers
@INSTALL_INCLUDE_CONDITIONAL_FALSE@INCLUDE =
@INSTALL_INCLUDE_CONDITIONAL_TRUE@INCLUDE = include
-SUBDIRS = gctp src $(INCLUDE) samples $(TESTDRIVERS)
+SUBDIRS = src $(INCLUDE) samples $(TESTDRIVERS)
all: all-recursive
.SUFFIXES:
diff --git a/include/Makefile.in b/include/Makefile.in
index 9938b23..afb7f40 100644
--- a/include/Makefile.in
+++ b/include/Makefile.in
@@ -190,7 +190,7 @@ LIBGCTP = $(top_builddir)/gctp/src/libGctp.la
# Boilerplate include
# Headers to install
-include_HEADERS = HE2_config.h HdfEosDef.h HDFEOSVersion.h cfortHdf.h ease.h
+include_HEADERS = HdfEosDef.h HDFEOSVersion.h cfortHdf.h ease.h
all: HE2_config.h
$(MAKE) $(AM_MAKEFLAGS) all-am
diff --git a/samples/Makefile.in b/samples/Makefile.in
index 9da6e28..6a6186c 100644
--- a/samples/Makefile.in
+++ b/samples/Makefile.in
@@ -108,7 +108,6 @@ AppendField_SOURCES = AppendField.c
AppendField_OBJECTS = AppendField.$(OBJEXT)
AppendField_LDADD = $(LDADD)
am__DEPENDENCIES_1 = $(top_builddir)/src/libhdfeos.la
-am__DEPENDENCIES_2 = $(top_builddir)/gctp/src/libGctp.la
AppendField_DEPENDENCIES = $(am__DEPENDENCIES_1) $(am__DEPENDENCIES_2)
DefineFields_SOURCES = DefineFields.c
DefineFields_OBJECTS = DefineFields.$(OBJEXT)
@@ -481,7 +480,7 @@ sharedstatedir = @sharedstatedir@
sysconfdir = @sysconfdir@
target_alias = @target_alias@
LIBHDFEOS2 = $(top_builddir)/src/libhdfeos.la
-LIBGCTP = $(top_builddir)/gctp/src/libGctp.la
+LIBGCTP =
# Boilerplate definitions file
--
2.10.0