From d4af25b51bbe9980340d70ae103ec92a284e69ce Mon Sep 17 00:00:00 2001 From: Raoul Jean Pierre Bonnal Date: Tue, 27 Dec 2016 22:11:28 +0100 Subject: [PATCH] gnu: Add r-tximport. --- gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++ 1 file changed, 22 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c605c58ea6..f8f6ea1ee7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7800,6 +7800,28 @@ (define-public r-gkmsvm kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.") (license license:gpl2+))) +(define-public r-tximport + (package + (name "r-tximport") + (version "1.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "tximport" version)) + (sha256 + (base32 + "1k5a7dad6zqg936s17f6cmwgqp11x24z9zhxndsgwbscgpyhpcb0")))) + (build-system r-build-system) + (home-page "http://bioconductor.org/packages/tximport") + (synopsis "Import and summarize transcript-level estimates for gene-level analysis") + (description + "This package provides tools to import transcript-level abundance, +estimated counts and transcript lengths, and to summarize them into matrices +for use with downstream gene-level analysis packages. Average transcript +length, weighted by sample-specific transcript abundance estimates, is +provided as a matrix which can be used as an offset for different expression +of gene-level counts.") + (license license:gpl2+))) + (define-public emboss (package (name "emboss")