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gnu: Add r-affxparser.

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* gnu/packages/bioconductor.scm (r-affxparser): New variable.
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Ricardo Wurmus 2019-09-15 22:50:25 +02:00
parent df8576e5c9
commit d6a5d9b24f
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gnu/packages/bioconductor.scm
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@ -1116,6 +1116,34 @@ (define-public r-affycoretools
to streamline the more common analyses that a Biostatistician might see.")
(license license:artistic2.0)))
(define-public r-affxparser
(package
(name "r-affxparser")
(version "1.56.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "affxparser" version))
(sha256
(base32
"1jv7k9pn4c7szi3ma2f2xsd58pkrkvjpk5wra73r6kc607qgrv33"))))
(properties `((upstream-name . "affxparser")))
(build-system r-build-system)
(home-page "https://github.com/HenrikBengtsson/affxparser")
(synopsis "Affymetrix File Parsing SDK")
(description
"This is a package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP,
BAR). It provides methods for fast and memory efficient parsing of Affymetrix
files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files
are supported. Currently, there are methods for reading @dfn{chip definition
file} (CDF) and a @dfn{cell intensity file} (CEL). These files can be read
either in full or in part. For example, probe signals from a few probesets
can be extracted very quickly from a set of CEL files into a convenient list
structure.")
;; The Fusion SDK contains files under GPLv2 and LGPLv2.1. The R code is
;; under LGPLv2+.
(license (list license:lgpl2.0+ license:lgpl2.1 license:gpl2))))
(define-public r-annotate
(package
(name "r-annotate")