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gnu: Add r-affxparser.
* gnu/packages/bioconductor.scm (r-affxparser): New variable.
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@ -1116,6 +1116,34 @@ (define-public r-affycoretools
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to streamline the more common analyses that a Biostatistician might see.")
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to streamline the more common analyses that a Biostatistician might see.")
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(license license:artistic2.0)))
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(license license:artistic2.0)))
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(define-public r-affxparser
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(package
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(name "r-affxparser")
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(version "1.56.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "affxparser" version))
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(sha256
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(base32
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"1jv7k9pn4c7szi3ma2f2xsd58pkrkvjpk5wra73r6kc607qgrv33"))))
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(properties `((upstream-name . "affxparser")))
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(build-system r-build-system)
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(home-page "https://github.com/HenrikBengtsson/affxparser")
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(synopsis "Affymetrix File Parsing SDK")
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(description
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"This is a package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP,
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BAR). It provides methods for fast and memory efficient parsing of Affymetrix
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files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files
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are supported. Currently, there are methods for reading @dfn{chip definition
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file} (CDF) and a @dfn{cell intensity file} (CEL). These files can be read
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either in full or in part. For example, probe signals from a few probesets
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can be extracted very quickly from a set of CEL files into a convenient list
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structure.")
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;; The Fusion SDK contains files under GPLv2 and LGPLv2.1. The R code is
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;; under LGPLv2+.
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(license (list license:lgpl2.0+ license:lgpl2.1 license:gpl2))))
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(define-public r-annotate
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(define-public r-annotate
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(package
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(package
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(name "r-annotate")
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(name "r-annotate")
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