mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-11-07 23:46:13 -05:00
gnu: r-rhdf5: Update to 2.24.0.
* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.24.0. [arguments]: Remove. [propagated-inputs]: Remove r-zlibbioc; add r-rhdf5lib. [inputs]: Remove perl.
This commit is contained in:
parent
c76e8baf9e
commit
d73c5728f3
1 changed files with 4 additions and 25 deletions
|
@ -8797,39 +8797,18 @@ (define-public r-tximport
|
|||
(define-public r-rhdf5
|
||||
(package
|
||||
(name "r-rhdf5")
|
||||
(version "2.22.0")
|
||||
(version "2.24.0")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "rhdf5" version))
|
||||
(sha256
|
||||
(base32
|
||||
"145858qg1xan6imxcbprzq3yn3mdf532aahdr6cibvdjg47hs4c1"))))
|
||||
"15cmmchhk8bnp94gxg0zk9qyzdjx5kv16dzpbnb62mkq7ydmifx6"))))
|
||||
(build-system r-build-system)
|
||||
(arguments
|
||||
`(#:phases
|
||||
(modify-phases %standard-phases
|
||||
(add-after 'unpack 'unpack-smallhdf5
|
||||
(lambda* (#:key outputs #:allow-other-keys)
|
||||
(system* "tar" "-xzvf"
|
||||
"src/hdf5source/hdf5small.tgz" "-C" "src/" )
|
||||
(substitute* "src/hdf5/configure"
|
||||
(("/bin/mv") "mv"))
|
||||
;; Remove timestamp and host system information to make
|
||||
;; the build reproducible.
|
||||
(substitute* "src/hdf5/src/libhdf5.settings.in"
|
||||
(("Configured on: @CONFIG_DATE@")
|
||||
"Configured on: Guix")
|
||||
(("Uname information:.*")
|
||||
"Uname information: Linux\n")
|
||||
;; Remove unnecessary store reference.
|
||||
(("C Compiler:.*")
|
||||
"C Compiler: GCC\n"))
|
||||
#t)))))
|
||||
(propagated-inputs
|
||||
`(("r-zlibbioc" ,r-zlibbioc)))
|
||||
`(("r-rhdf5lib" ,r-rhdf5lib)))
|
||||
(inputs
|
||||
`(("perl" ,perl)
|
||||
("zlib" ,zlib)))
|
||||
`(("zlib" ,zlib)))
|
||||
(home-page "https://bioconductor.org/packages/rhdf5")
|
||||
(synopsis "HDF5 interface to R")
|
||||
(description
|
||||
|
|
Loading…
Reference in a new issue