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gnu: r-dexseq: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-dexseq): Move from here...
* gnu/packages/bioconductor.scm (r-dexseq): ...to here.
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zimoun 2021-03-08 18:57:56 +01:00 committed by Ricardo Wurmus
parent 373545855d
commit d769b10714
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2 changed files with 45 additions and 45 deletions
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45
gnu/packages/bioconductor.scm
View file

@ -1525,6 +1525,51 @@ (define-public r-deseq2
distribution.")
(license license:lgpl3+)))
(define-public r-dexseq
(package
(name "r-dexseq")
(version "1.36.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DEXSeq" version))
(sha256
(base32
"0wfjb42xcr4wjy8a654b74411dky8hp6sp8xdwf0sxqgsxy106qi"))))
(properties `((upstream-name . "DEXSeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-biomart" ,r-biomart)
("r-deseq2" ,r-deseq2)
("r-genefilter" ,r-genefilter)
("r-geneplotter" ,r-geneplotter)
("r-genomicranges" ,r-genomicranges)
("r-hwriter" ,r-hwriter)
("r-iranges" ,r-iranges)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-statmod" ,r-statmod)
("r-stringr" ,r-stringr)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/DEXSeq")
(synopsis "Inference of differential exon usage in RNA-Seq")
(description
"This package is focused on finding differential exon usage using RNA-seq
exon counts between samples with different experimental designs. It provides
functions that allows the user to make the necessary statistical tests based
on a model that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear models for
testing. The package also provides functions for the visualization and
exploration of the results.")
(license license:gpl3+)))
(define-public r-genefilter
(package
(name "r-genefilter")

45
gnu/packages/bioinformatics.scm
View file

@ -7387,51 +7387,6 @@ (define-public r-demultiplex
")
(license license:cc0))))
(define-public r-dexseq
(package
(name "r-dexseq")
(version "1.36.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DEXSeq" version))
(sha256
(base32
"0wfjb42xcr4wjy8a654b74411dky8hp6sp8xdwf0sxqgsxy106qi"))))
(properties `((upstream-name . "DEXSeq")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-biomart" ,r-biomart)
("r-deseq2" ,r-deseq2)
("r-genefilter" ,r-genefilter)
("r-geneplotter" ,r-geneplotter)
("r-genomicranges" ,r-genomicranges)
("r-hwriter" ,r-hwriter)
("r-iranges" ,r-iranges)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-statmod" ,r-statmod)
("r-stringr" ,r-stringr)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/DEXSeq")
(synopsis "Inference of differential exon usage in RNA-Seq")
(description
"This package is focused on finding differential exon usage using RNA-seq
exon counts between samples with different experimental designs. It provides
functions that allows the user to make the necessary statistical tests based
on a model that uses the negative binomial distribution to estimate the
variance between biological replicates and generalized linear models for
testing. The package also provides functions for the visualization and
exploration of the results.")
(license license:gpl3+)))
(define-public r-annotationforge
(package
(name "r-annotationforge")