diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 525509f56d..325c159df1 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -806,6 +806,44 @@ (define-public bioawk intended to behave exactly the same as the original BWK awk.") (license license:x11))) +(define-public python-cellbender + (package + (name "python-cellbender") + (version "0.2.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/broadinstitute/CellBender") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1zav2q8nnss80i25y06fccagkvrqsy7lpylsl4dxv4qkj8p4fnv3")))) + (build-system python-build-system) + (arguments + (list #:tests? #false)) ;there are none + (propagated-inputs + (list python-anndata + python-matplotlib + python-numpy + python-pandas + python-pyro-ppl + python-scikit-learn + python-scipy + python-sphinx + python-sphinx-argparse + python-sphinx-autodoc-typehints + python-sphinx-rtd-theme + python-sphinxcontrib-programoutput + python-tables)) + (home-page "https://cellbender.rtfd.io/") + (synopsis "Eliminate technical artifacts from single-cell RNA-seq data") + (description + "CellBender is a software package for eliminating technical artifacts +from high-throughput single-cell RNA sequencing (scRNA-seq) data.") + (license license:bsd-3))) + (define-public python-htsget (package (name "python-htsget")