gnu: Add r-bedtorch.

* gnu/packages/bioinformatics.scm (r-bedtorch): New variable.
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Ricardo Wurmus 2022-12-22 11:18:02 +01:00
parent 6d2f312b23
commit d8a9d55b57
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@ -538,6 +538,46 @@ (define-public pbcopper
and utilities for PacBio C++ applications.")
(license license:bsd-3)))
(define-public r-bedtorch
(let ((commit "f5ff4f83b94f59eac660333c64e4b2f296b35cea")
(revision "1"))
(package
(name "r-bedtorch")
(version (git-version "0.1.12.12" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/haizi-zh/bedtorch/")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"08l04iqf54b5995gc7rvqqd7w327fwqs7qjyhc9y5cqfj8yv4c48"))))
(properties `((upstream-name . "bedtorch")))
(build-system r-build-system)
(propagated-inputs
(list r-assertthat
r-curl
r-data-table
r-dplyr
r-genomeinfodb
r-genomicranges
r-purrr
r-r-utils
r-rcpp
r-rcurl
r-readr
r-rhtslib12
r-s4vectors
r-stringr
r-tidyr))
(home-page "https://github.com/haizi-zh/bedtorch/")
(synopsis "R package for fast BED-file manipulation")
(description
"The goal of bedtorch is to provide a fast BED file manipulation tool
suite native in R.")
(license license:expat))))
(define-public r-btools
(let ((commit "fa21d4ca01d37ea4d98b45582453f3bf95cbc2b5")
(revision "1"))