ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-11-07 23:46:13 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: samtools-0.1: Install headers and library.

Browse source 
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Add build phases
'install-library and 'install-headers.
This commit is contained in:
Ricardo Wurmus 2022-01-20 15:25:19 +01:00
parent 15b509e654
commit d99e42d7f6
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
1 changed files with 18 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

19
gnu/packages/bioinformatics.scm
View file

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021, 2022 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
@ -6316,6 +6316,11 @@ (define-public samtools-0.1
#:make-flags
(list "LIBCURSES=-lncurses")
,@(substitute-keyword-arguments (package-arguments samtools)
((#:modules _ #f)
'((ice-9 ftw)
(ice-9 regex)
(guix build gnu-build-system)
(guix build utils)))
((#:phases phases)
`(modify-phases ,phases
(replace 'install
@ -6325,6 +6330,18 @@ (define-public samtools-0.1
(mkdir-p bin)
(install-file "samtools" bin)
#t)))
(add-after 'install 'install-library
(lambda* (#:key outputs #:allow-other-keys)
(let ((lib (string-append (assoc-ref outputs "out") "/lib")))
(install-file "libbam.a" lib))))
(add-after 'install 'install-headers
(lambda* (#:key outputs #:allow-other-keys)
(let ((include (string-append (assoc-ref outputs "out")
"/include/samtools/")))
(for-each (lambda (file)
(install-file file include))
(scandir "." (lambda (name)
(string-match "\\.h$" name)))))))
(delete 'patch-tests)
(delete 'configure))))))))