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gnu: cutadapt: Regenerate Cython files.

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* gnu/packages/bioinformatics.scm (cutadapt)[arguments]: Add phase
'always-cythonize.
This commit is contained in:
Ricardo Wurmus 2021-10-24 21:23:20 +00:00
parent 3eeae68af1
commit da526f33f2
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1 changed files with 10 additions and 0 deletions
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gnu/packages/bioinformatics.scm
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@ -2616,6 +2616,16 @@ (define-public cutadapt
(base32
"1vqmsfkm6llxzmsz9wcfcvzx9a9f8iabvwik2rbyn7nc4wm25z89"))))
(build-system python-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'always-cythonize
(lambda _
(delete-file "src/cutadapt/_align.c")
;; If PKG-INFO exists, setup.py decides not to run Cython.
(substitute* "setup.py"
(("os.path.exists\\('PKG-INFO'\\):")
"os.path.exists('totally-does-not-exist'):")))))))
(inputs
`(("python-dnaio" ,python-dnaio)
("python-xopen" ,python-xopen)))