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gnu: Add r-bsgenome-dmelanogaster-ucsc-dm3-masked.
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked): New variable.
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@ -61,6 +61,41 @@ (define-public r-bsgenome-dmelanogaster-ucsc-dm6
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objects.")
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(license license:artistic2.0)))
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(define-public r-bsgenome-dmelanogaster-ucsc-dm3-masked
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(package
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(name "r-bsgenome-dmelanogaster-ucsc-dm3-masked")
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(version "1.3.99")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "http://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"BSgenome.Dmelanogaster.UCSC.dm3.masked_"
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version ".tar.gz"))
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(sha256
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(base32
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"1756csb09f1br9rj1l3f08qyh4hlymdbd0cfn8x3fq39dn45m5ap"))))
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(properties
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`((upstream-name . "BSgenome.Dmelanogaster.UCSC.dm3.masked")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-bsgenome" ,r-bsgenome)
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("r-bsgenome-dmelanogaster-ucsc-dm3"
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,r-bsgenome-dmelanogaster-ucsc-dm3)))
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(home-page "https://www.bioconductor.org/packages/BSgenome.Dmelanogaster.UCSC.dm3.masked/")
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(synopsis "Full masked genome sequences for Fly")
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(description
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"This package provides full masked genome sequences for Drosophila
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melanogaster (Fly) as provided by UCSC (dm3, April 2006) and stored in
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Biostrings objects. The sequences are the same as in
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BSgenome.Dmelanogaster.UCSC.dm3, except that each of them has the 4 following
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masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of
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intra-contig ambiguities (AMB mask), (3) the mask of repeats from
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RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats
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Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default.")
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(license license:artistic2.0)))
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(define-public r-hpar
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(package
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(name "r-hpar")
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