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gnu: Add python-pydicom.

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* gnu/packages/python-science.scm (python-pydicom): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Antero Mejr 2022-06-15 15:39:52 +00:00 committed by Ludovic Courtès
parent 15caeb745c
commit e24b9b42bc
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gnu/packages/python-science.scm
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@ -20,6 +20,7 @@
;;; Copyright © 2022 Paul A. Patience <paul@apatience.com>
;;; Copyright © 2022 Wiktor Żelazny <wzelazny@vurv.cz>
;;; Copyright © 2022 Eric Bavier <bavier@posteo.net>
;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
;;; Copyright © 2022 jgart <jgart@dismail.de>
;;;
;;; This file is part of GNU Guix.
@ -49,6 +50,7 @@ (define-module (gnu packages python-science)
#:use-module (gnu packages crypto)
#:use-module (gnu packages databases)
#:use-module (gnu packages gcc)
#:use-module (gnu packages image)
#:use-module (gnu packages image-processing)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages maths)
@ -1488,6 +1490,55 @@ (define-public python-gpy
machine learning algorithms based on GPs.")
(license license:bsd-3)))
(define-public python-pydicom
(package
(name "python-pydicom")
(version "2.3.0")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/pydicom/pydicom")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"18l26s53yf5j9yh2zwq83n74qq4f2iq0cfblamsw4y9k35l1c108"))))
(build-system python-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
(chdir "pydicom/tests")
(invoke "python3" "-m" "pytest" "-k" ;skip tests using web data
(string-append
"not test_jpeg_ls_pixel_data.py"
" and not test_gdcm_pixel_data.py"
" and not test_pillow_pixel_data.py"
" and not test_rle_pixel_data.py"
" and not Test_JPEG_LS_Lossless_transfer_syntax"
" and not test_numpy_pixel_data.py"
" and not test_data_manager.py"
" and not test_handler_util.py"
" and not test_overlay_np.py"
" and not test_encoders_pydicom.py"
" and not test_encaps.py"
" and not test_reading_ds_with_known_tags_with_UN_VR"
" and not TestDatasetOverlayArray"
" and not TestReader"
" and not test_filewriter.py"))))))))
(native-inputs (list python-pytest))
(inputs (list gdcm libjpeg-turbo))
(propagated-inputs (list python-numpy python-pillow))
(home-page "https://github.com/pydicom/pydicom")
(synopsis "Python library for reading and writing DICOM data")
(description "@code{python-pydicom} is a Python library for reading and
writing DICOM medical imaging data. It lets developers read, modify and write
DICOM data in a pythonic way.")
(license license:expat)))
(define-public python-deepdish
(package
(name "python-deepdish")