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gnu: Add r-degreport.
* gnu/packages/bioconductor.scm (r-degreport): New variable.
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@ -4723,6 +4723,77 @@ (define-public r-deepsnv
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bases such as COSMIC.")
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bases such as COSMIC.")
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(license license:gpl3)))
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(license license:gpl3)))
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(define-public r-degreport
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(package
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(name "r-degreport")
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(version "1.36.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "DEGreport" version))
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(sha256
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(base32
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"15xm1l2qgsyzaw820a1fq5qdzh5pj4dmr1hx6s6b6wm2p02cvvai"))
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(snippet
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'(delete-file "docs/jquery.sticky-kit.min.js"))))
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(properties `((upstream-name . "DEGreport")))
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(build-system r-build-system)
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(arguments
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(list
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#:phases
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'(modify-phases %standard-phases
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(add-after 'unpack 'process-javascript
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(lambda* (#:key inputs #:allow-other-keys)
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(invoke "esbuild"
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(assoc-ref inputs "js-jquery-sticky-kit")
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"--minify"
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"--outfile=docs/jquery.sticky-kit.min.js"))))))
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(propagated-inputs (list r-biobase
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r-biocgenerics
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r-broom
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r-circlize
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r-cluster
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r-complexheatmap
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r-consensusclusterplus
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r-cowplot
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r-deseq2
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r-dplyr
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r-edger
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r-ggdendro
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r-ggplot2
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r-ggrepel
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r-knitr
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r-logging
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r-magrittr
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r-psych
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r-rcolorbrewer
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r-reshape
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r-rlang
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r-s4vectors
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r-scales
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r-stringr
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r-summarizedexperiment
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r-tibble
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r-tidyr))
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(native-inputs
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`(("esbuild" ,esbuild)
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("r-knitr" ,r-knitr)
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("js-jquery-sticky-kit"
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,(origin
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(method url-fetch)
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(uri "https://raw.githubusercontent.com/leafo/sticky-kit/\
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v1.1.2/jquery.sticky-kit.js")
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(sha256
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(base32
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"17c3a1hqc3ybwj7hpw8prazajp2x98aq7nyfn71h6lzjvblq297g"))))))
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(home-page "https://lpantano.github.io/DEGreport/")
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(synopsis "Report of DEG analysis")
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(description
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"This is a package for creating na HTML report of differential expression
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analyses of count data. It integrates some of the code mentioned in DESeq2
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and @code{edgeR} vignettes, and report a ranked list of genes according to the
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fold changes mean and variability for each selected gene.")
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(license license:expat)))
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(define-public r-delayedarray
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(define-public r-delayedarray
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(package
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(package
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(name "r-delayedarray")
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(name "r-delayedarray")
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