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gnu: Add r-ioniser.
* gnu/packages/bioconductor.scm (r-ioniser): New variable.
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@ -2483,3 +2483,41 @@ (define-public r-linnorm
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@code{RnaXSim} function is included for simulating RNA-seq data for the
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@code{RnaXSim} function is included for simulating RNA-seq data for the
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evaluation of DEG analysis methods.")
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evaluation of DEG analysis methods.")
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(license license:expat)))
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(license license:expat)))
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(define-public r-ioniser
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(package
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(name "r-ioniser")
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(version "2.6.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "IONiseR" version))
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(sha256
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(base32
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"01lqisdlsvym8nhgpzn7lpcddk9lv9253dy9v65r2dicb5xqhj00"))))
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(properties `((upstream-name . "IONiseR")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biocparallel" ,r-biocparallel)
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("r-biostrings" ,r-biostrings)
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("r-bit64" ,r-bit64)
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("r-dplyr" ,r-dplyr)
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("r-ggplot2" ,r-ggplot2)
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("r-magrittr" ,r-magrittr)
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("r-rhdf5" ,r-rhdf5)
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("r-shortread" ,r-shortread)
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("r-stringr" ,r-stringr)
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("r-tibble" ,r-tibble)
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("r-tidyr" ,r-tidyr)
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("r-xvector" ,r-xvector)))
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(home-page "https://bioconductor.org/packages/IONiseR/")
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(synopsis "Quality assessment tools for Oxford Nanopore MinION data")
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(description
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"IONiseR provides tools for the quality assessment of Oxford Nanopore
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MinION data. It extracts summary statistics from a set of fast5 files and can
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be used either before or after base calling. In addition to standard
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summaries of the read-types produced, it provides a number of plots for
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visualising metrics relative to experiment run time or spatially over the
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surface of a flowcell.")
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(license license:expat)))
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