gnu: Add r-ioniser.

* gnu/packages/bioconductor.scm (r-ioniser): New variable.
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Ricardo Wurmus 2019-03-15 10:57:44 +01:00
parent 43a0db3cd4
commit e4a17532f9
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@ -2483,3 +2483,41 @@ (define-public r-linnorm
@code{RnaXSim} function is included for simulating RNA-seq data for the
evaluation of DEG analysis methods.")
(license license:expat)))
(define-public r-ioniser
(package
(name "r-ioniser")
(version "2.6.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "IONiseR" version))
(sha256
(base32
"01lqisdlsvym8nhgpzn7lpcddk9lv9253dy9v65r2dicb5xqhj00"))))
(properties `((upstream-name . "IONiseR")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biocparallel" ,r-biocparallel)
("r-biostrings" ,r-biostrings)
("r-bit64" ,r-bit64)
("r-dplyr" ,r-dplyr)
("r-ggplot2" ,r-ggplot2)
("r-magrittr" ,r-magrittr)
("r-rhdf5" ,r-rhdf5)
("r-shortread" ,r-shortread)
("r-stringr" ,r-stringr)
("r-tibble" ,r-tibble)
("r-tidyr" ,r-tidyr)
("r-xvector" ,r-xvector)))
(home-page "https://bioconductor.org/packages/IONiseR/")
(synopsis "Quality assessment tools for Oxford Nanopore MinION data")
(description
"IONiseR provides tools for the quality assessment of Oxford Nanopore
MinION data. It extracts summary statistics from a set of fast5 files and can
be used either before or after base calling. In addition to standard
summaries of the read-types produced, it provides a number of plots for
visualising metrics relative to experiment run time or spatially over the
surface of a flowcell.")
(license license:expat)))