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gnu: Add r-seqbias.

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* gnu/packages/bioconductor.scm (r-seqbias): New variable.
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Ricardo Wurmus 2019-09-15 21:03:54 +02:00
parent 12105c6c3a
commit e5dfcd8e26
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1 changed files with 28 additions and 0 deletions
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gnu/packages/bioconductor.scm
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@ -5701,6 +5701,34 @@ (define-public r-bigmelon
@code{gdsfmt} package.")
(license license:gpl3)))
(define-public r-seqbias
(package
(name "r-seqbias")
(version "1.32.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "seqbias" version))
(sha256
(base32
"1pk97jsq0rxijsdm5wnmlw79mhy19skdq1h3mmfbdjh560md47lw"))))
(properties `((upstream-name . "seqbias")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-genomicranges" ,r-genomicranges)
("r-rhtslib" ,r-rhtslib)))
(inputs
`(("zlib" ,zlib))) ; This comes from rhtslib.
(home-page "https://bioconductor.org/packages/seqbias/")
(synopsis "Estimation of per-position bias in high-throughput sequencing data")
(description
"This package implements a model of per-position sequencing bias in
high-throughput sequencing data using a simple Bayesian network, the structure
and parameters of which are trained on a set of aligned reads and a reference
genome sequence.")
(license license:lgpl3)))
(define-public r-wavcluster
(package
(name "r-wavcluster")