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gnu: Add r-bseqsc.

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* gnu/packages/bioinformatics.scm (r-bseqsc): New variable.
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Ricardo Wurmus 2018-09-24 13:24:13 +02:00 committed by Ricardo Wurmus
parent 28829c040f
commit e72702475d
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1 changed files with 45 additions and 0 deletions
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gnu/packages/bioinformatics.scm
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@ -13824,3 +13824,48 @@ (define-public r-cssam
SAM.")
;; Any version
(license license:lgpl2.1+))))
(define-public r-bseqsc
(let ((revision "1")
(commit "fef3f3e38dcf3df37103348b5780937982b43b98"))
(package
(name "r-bseqsc")
(version (git-version "1.0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/shenorrLab/bseqsc.git")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"1prw13wa20f7wlc3gkkls66n1kxz8d28qrb8icfqdwdnnv8w5qg8"))))
(build-system r-build-system)
(propagated-inputs
`(("r-abind" ,r-abind)
("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-cssam" ,r-cssam)
("r-dplyr" ,r-dplyr)
("r-e1071" ,r-e1071)
("r-edger" ,r-edger)
("r-ggplot2" ,r-ggplot2)
("r-nmf" ,r-nmf)
("r-openxlsx" ,r-openxlsx)
("r-pkgmaker" ,r-pkgmaker)
("r-plyr" ,r-plyr)
("r-preprocesscore" ,r-preprocesscore)
("r-rngtools" ,r-rngtools)
("r-scales" ,r-scales)
("r-stringr" ,r-stringr)
("r-xbioc" ,r-xbioc)))
(home-page "https://github.com/shenorrLab/bseqsc")
(synopsis "Deconvolution of bulk sequencing experiments using single cell data")
(description "BSeq-sc is a bioinformatics analysis pipeline that
leverages single-cell sequencing data to estimate cell type proportion and
cell type-specific gene expression differences from RNA-seq data from bulk
tissue samples. This is a companion package to the publication \"A
single-cell transcriptomic map of the human and mouse pancreas reveals inter-
and intra-cell population structure.\" Baron et al. Cell Systems (2016)
@url{https://www.ncbi.nlm.nih.gov/pubmed/27667365}.")
(license license:gpl2+))))