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gnu: cnvkit: Update to 0.9.9.
* gnu/packages/bioinformatics.scm (cnvkit): Update to 0.9.9. [build-system]: Use pyproject-build-system. [arguments]: Relax restriction on python-joblib. [propagated-inputs]: Add python-pomegranate and python-scikit-learn.
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1 changed files with 16 additions and 5 deletions
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@ -14225,7 +14225,7 @@ (define-public nanopolish
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(define-public cnvkit
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(package
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(name "cnvkit")
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(version "0.9.5")
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(version "0.9.9")
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(source
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(origin
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(method git-fetch)
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@ -14234,17 +14234,28 @@ (define-public cnvkit
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0g2f78k68yglmj4fsfmgs8idqv3di9aj53fg0ld0hqljg8chhh82"))))
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(build-system python-build-system)
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(base32 "1q4l7jhr1k135an3n9aa9wsid5lk6fwxb0hcldrr6v6y76zi4gj1"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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#:phases
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'(modify-phases %standard-phases
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;; See upstream commit eee0f6eaec57d5c6e58142d661979f3aacc5f76a
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(add-after 'unpack 'compatibility
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(lambda _
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(substitute* "setup.py"
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(("'joblib.*") "")))))))
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(propagated-inputs
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(list python-biopython
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python-future
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python-matplotlib
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python-numpy
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python-reportlab
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python-pandas
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python-pysam
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python-pomegranate
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python-pyfaidx
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python-pysam
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python-reportlab
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python-scikit-learn
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python-scipy
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;; R packages
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r-dnacopy))
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