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gnu: cnvkit: Update to 0.9.9.

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* gnu/packages/bioinformatics.scm (cnvkit): Update to 0.9.9.
[build-system]: Use pyproject-build-system.
[arguments]: Relax restriction on python-joblib.
[propagated-inputs]: Add python-pomegranate and python-scikit-learn.
This commit is contained in:
Ricardo Wurmus 2022-12-12 11:16:17 +01:00
parent 1369b53d49
commit e84042fdd4
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1 changed files with 16 additions and 5 deletions
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gnu/packages/bioinformatics.scm
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@ -14225,7 +14225,7 @@ (define-public nanopolish
(define-public cnvkit (define-public cnvkit
(package (package
(name "cnvkit") (name "cnvkit")
(version "0.9.5") (version "0.9.9")
(source (source
(origin (origin
(method git-fetch) (method git-fetch)
@ -14234,17 +14234,28 @@ (define-public cnvkit
(commit (string-append "v" version)))) (commit (string-append "v" version))))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256
(base32 "0g2f78k68yglmj4fsfmgs8idqv3di9aj53fg0ld0hqljg8chhh82")))) (base32 "1q4l7jhr1k135an3n9aa9wsid5lk6fwxb0hcldrr6v6y76zi4gj1"))))
(build-system python-build-system) (build-system pyproject-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
;; See upstream commit eee0f6eaec57d5c6e58142d661979f3aacc5f76a
(add-after 'unpack 'compatibility
(lambda _
(substitute* "setup.py"
(("'joblib.*") "")))))))
(propagated-inputs (propagated-inputs
(list python-biopython (list python-biopython
python-future python-future
python-matplotlib python-matplotlib
python-numpy python-numpy
python-reportlab
python-pandas python-pandas
python-pysam python-pomegranate
python-pyfaidx python-pyfaidx
python-pysam
python-reportlab
python-scikit-learn
python-scipy python-scipy
;; R packages ;; R packages
r-dnacopy)) r-dnacopy))