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gnu: Add r-gagedata.

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* gnu/packages/bioconductor.scm (r-gagedata): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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Mădălin Ionel Patrașcu 2020-12-16 23:17:01 +01:00 committed by Ricardo Wurmus
parent 1b02b12c05
commit eb2f1a7dd9
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gnu/packages/bioconductor.scm
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@ -1103,6 +1103,32 @@ (define-public r-affydata
package @code{affy}.")
(license license:gpl2+)))
(define-public r-gagedata
(package
(name "r-gagedata")
(version "2.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "gageData" version 'experiment))
(sha256
(base32 "16lmnvmbykvbdgwyx7r2jc217gb9nidn81860v5kri99g97j4jdn"))))
(properties `((upstream-name . "gageData")))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/gageData")
(synopsis "Auxillary data for gage package")
(description
"This is a supportive data package for the software package @code{gage}.
However, the data supplied here are also useful for gene set or pathway
analysis or microarray data analysis in general. In this package, we provide
two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and
BMP6 (originally published as an demo dataset for GAGE, also registered as
GSE13604 in GEO). This package also includes commonly used gene set data based
on KEGG pathways and GO terms for major research species, including human,
mouse, rat and budding yeast. Mapping data between common gene IDs for budding
yeast are also included.")
(license license:gpl2+)))
(define-public r-coverageview
(package
(name "r-coverageview")