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gnu: r-deconstructsigs: Move from "annotation" to "package" section.

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* gnu/packages/bioconductor.scm (r-deconstructsigs): Move variable.
This commit is contained in:
Ricardo Wurmus 2020-12-17 11:40:31 +01:00
parent e7fa79fd91
commit eb3c105126
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1 changed files with 28 additions and 28 deletions
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56
gnu/packages/bioconductor.scm
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@ -748,34 +748,6 @@ (define-public r-illuminahumanmethylationepicmanifest
"This is a manifest package for Illumina's EPIC methylation arrays.") "This is a manifest package for Illumina's EPIC methylation arrays.")
(license license:artistic2.0))) (license license:artistic2.0)))
;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
;; from Bioconductor.
(define-public r-deconstructsigs
(package
(name "r-deconstructsigs")
(version "1.8.0")
(source (origin
(method url-fetch)
(uri (cran-uri "deconstructSigs" version))
(sha256
(base32
"014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"))))
(properties
`((upstream-name . "deconstructSigs")))
(build-system r-build-system)
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-genomeinfodb" ,r-genomeinfodb)
("r-reshape2" ,r-reshape2)))
(home-page "https://github.com/raerose01/deconstructSigs")
(synopsis "Identifies signatures present in a tumor sample")
(description "This package takes sample information in the form of the
fraction of mutations in each of 96 trinucleotide contexts and identifies
the weighted combination of published signatures that, when summed, most
closely reconstructs the mutational profile.")
(license license:gpl2+)))
;; This is a CRAN package, but it depends on Bioconductor packages. ;; This is a CRAN package, but it depends on Bioconductor packages.
(define-public r-nmf (define-public r-nmf
(package (package
@ -1289,6 +1261,34 @@ (define-public r-ideoviz
arbitrary genomic intervals along chromosomal ideogram.") arbitrary genomic intervals along chromosomal ideogram.")
(license license:gpl2))) (license license:gpl2)))
;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
;; from Bioconductor.
(define-public r-deconstructsigs
(package
(name "r-deconstructsigs")
(version "1.8.0")
(source (origin
(method url-fetch)
(uri (cran-uri "deconstructSigs" version))
(sha256
(base32
"014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"))))
(properties
`((upstream-name . "deconstructSigs")))
(build-system r-build-system)
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-genomeinfodb" ,r-genomeinfodb)
("r-reshape2" ,r-reshape2)))
(home-page "https://github.com/raerose01/deconstructSigs")
(synopsis "Identifies signatures present in a tumor sample")
(description "This package takes sample information in the form of the
fraction of mutations in each of 96 trinucleotide contexts and identifies
the weighted combination of published signatures that, when summed, most
closely reconstructs the mutational profile.")
(license license:gpl2+)))
(define-public r-affycomp (define-public r-affycomp
(package (package
(name "r-affycomp") (name "r-affycomp")