ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-12-25 13:58:15 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: r-deconstructsigs: Move from "annotation" to "package" section.

Browse source 
* gnu/packages/bioconductor.scm (r-deconstructsigs): Move variable.
This commit is contained in:
Ricardo Wurmus 2020-12-17 11:40:31 +01:00
parent e7fa79fd91
commit eb3c105126
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
1 changed files with 28 additions and 28 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

56
gnu/packages/bioconductor.scm
View file

@ -748,34 +748,6 @@ (define-public r-illuminahumanmethylationepicmanifest
"This is a manifest package for Illumina's EPIC methylation arrays.")
(license license:artistic2.0)))
;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
;; from Bioconductor.
(define-public r-deconstructsigs
(package
(name "r-deconstructsigs")
(version "1.8.0")
(source (origin
(method url-fetch)
(uri (cran-uri "deconstructSigs" version))
(sha256
(base32
"014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"))))
(properties
`((upstream-name . "deconstructSigs")))
(build-system r-build-system)
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-genomeinfodb" ,r-genomeinfodb)
("r-reshape2" ,r-reshape2)))
(home-page "https://github.com/raerose01/deconstructSigs")
(synopsis "Identifies signatures present in a tumor sample")
(description "This package takes sample information in the form of the
fraction of mutations in each of 96 trinucleotide contexts and identifies
the weighted combination of published signatures that, when summed, most
closely reconstructs the mutational profile.")
(license license:gpl2+)))
;; This is a CRAN package, but it depends on Bioconductor packages.
(define-public r-nmf
(package
@ -1289,6 +1261,34 @@ (define-public r-ideoviz
arbitrary genomic intervals along chromosomal ideogram.")
(license license:gpl2)))
;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
;; from Bioconductor.
(define-public r-deconstructsigs
(package
(name "r-deconstructsigs")
(version "1.8.0")
(source (origin
(method url-fetch)
(uri (cran-uri "deconstructSigs" version))
(sha256
(base32
"014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"))))
(properties
`((upstream-name . "deconstructSigs")))
(build-system r-build-system)
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-genomeinfodb" ,r-genomeinfodb)
("r-reshape2" ,r-reshape2)))
(home-page "https://github.com/raerose01/deconstructSigs")
(synopsis "Identifies signatures present in a tumor sample")
(description "This package takes sample information in the form of the
fraction of mutations in each of 96 trinucleotide contexts and identifies
the weighted combination of published signatures that, when summed, most
closely reconstructs the mutational profile.")
(license license:gpl2+)))
(define-public r-affycomp
(package
(name "r-affycomp")