gnu: Add miniasm.

* gnu/packages/bioinformatics.scm (miniasm): New variable.
This commit is contained in:
Roel Janssen 2020-04-30 15:30:16 +02:00
parent e174231863
commit eca648b65b
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@ -13312,6 +13312,42 @@ (define-public minimap2
@end enumerate\n")
(license license:expat)))
(define-public miniasm
(package
(name "miniasm")
(version "0.3")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/lh3/miniasm/archive/v"
version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0g89pa98dvh34idv7w1zv12bsbyr3a11c4qb1cdcz68gyda88s4v"))))
(build-system gnu-build-system)
(inputs
`(("zlib" ,zlib)))
(arguments
`(#:tests? #f ; There are no tests.
#:phases
(modify-phases %standard-phases
(delete 'configure)
(replace 'install
(lambda* (#:key inputs outputs #:allow-other-keys)
(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
(install-file "miniasm" bin)
(install-file "minidot" bin)))))))
(home-page "https://github.com/lh3/miniasm")
(synopsis "Ultrafast de novo assembly for long noisy reads")
(description "Miniasm is a very fast OLC-based de novo assembler for noisy
long reads. It takes all-vs-all read self-mappings (typically by minimap) as
input and outputs an assembly graph in the GFA format. Different from
mainstream assemblers, miniasm does not have a consensus step. It simply
concatenates pieces of read sequences to generate the final unitig sequences.
Thus the per-base error rate is similar to the raw input reads.")
(license license:expat)))
(define-public r-circus
(package
(name "r-circus")