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gnu: Add miniasm.
* gnu/packages/bioinformatics.scm (miniasm): New variable.
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@ -13312,6 +13312,42 @@ (define-public minimap2
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@end enumerate\n")
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(license license:expat)))
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(define-public miniasm
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(package
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(name "miniasm")
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(version "0.3")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://github.com/lh3/miniasm/archive/v"
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version ".tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256
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(base32
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"0g89pa98dvh34idv7w1zv12bsbyr3a11c4qb1cdcz68gyda88s4v"))))
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(build-system gnu-build-system)
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(inputs
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`(("zlib" ,zlib)))
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(arguments
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`(#:tests? #f ; There are no tests.
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#:phases
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(modify-phases %standard-phases
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(delete 'configure)
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(replace 'install
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(lambda* (#:key inputs outputs #:allow-other-keys)
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(let ((bin (string-append (assoc-ref outputs "out") "/bin")))
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(install-file "miniasm" bin)
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(install-file "minidot" bin)))))))
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(home-page "https://github.com/lh3/miniasm")
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(synopsis "Ultrafast de novo assembly for long noisy reads")
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(description "Miniasm is a very fast OLC-based de novo assembler for noisy
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long reads. It takes all-vs-all read self-mappings (typically by minimap) as
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input and outputs an assembly graph in the GFA format. Different from
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mainstream assemblers, miniasm does not have a consensus step. It simply
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concatenates pieces of read sequences to generate the final unitig sequences.
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Thus the per-base error rate is similar to the raw input reads.")
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(license license:expat)))
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(define-public r-circus
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(package
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(name "r-circus")
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