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gnu: Add r-ascat.
* gnu/packages/bioinformatics.scm (r-ascat): New variable.
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@ -14660,3 +14660,32 @@ (define-public nanosv
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produced by Oxford Nanopore Technologies’ MinION, GridION or PromethION
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instruments, or Pacific Biosciences RSII or Sequel sequencers.")
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(license license:expat)))
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(define-public r-ascat
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(package
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(name "r-ascat")
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(version "2.5.2")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/Crick-CancerGenomics/ascat.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0cc0y3as6cb64iwnx0pgbajiig7m4z723mns9d5i4j09ccid3ccm"))))
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'move-to-ascat-dir
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(lambda _
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(chdir "ASCAT"))))))
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(propagated-inputs
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`(("r-rcolorbrewer" ,r-rcolorbrewer)))
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(home-page "https://github.com/VanLoo-lab/ascat/")
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(synopsis "Allele-Specific Copy Number Analysis of Tumors in R")
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(description "This package provides the @acronym{ASCAT,Allele-Specific Copy
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Number Analysis of Tumors} R package that can be used to infer tumour purity,
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ploidy and allele-specific copy number profiles.")
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(license license:gpl3)))
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