mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2025-01-14 15:10:16 -05:00
gnu: Add python-genomic-regions.
* gnu/packages/bioinformatics.scm (python-genomic-regions): New variable. Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
This commit is contained in:
parent
9ddc4e5b03
commit
ee069ec651
1 changed files with 32 additions and 0 deletions
|
@ -57,6 +57,7 @@ (define-module (gnu packages bioinformatics)
|
|||
#:use-module (guix build-system meson)
|
||||
#:use-module (guix build-system ocaml)
|
||||
#:use-module (guix build-system perl)
|
||||
#:use-module (guix build-system pyproject)
|
||||
#:use-module (guix build-system python)
|
||||
#:use-module (guix build-system qt)
|
||||
#:use-module (guix build-system r)
|
||||
|
@ -10601,6 +10602,37 @@ (define-public salmon
|
|||
variational inference.")
|
||||
(license license:gpl3+)))
|
||||
|
||||
(define-public python-genomic-regions
|
||||
(package
|
||||
(name "python-genomic-regions")
|
||||
(version "0.0.10")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (pypi-uri "genomic_regions" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0hz811iyd1prml1r90qyzimmwyjwycwkjqw4vnl12bxy61rfzjz5"))))
|
||||
(build-system pyproject-build-system)
|
||||
(propagated-inputs
|
||||
(list python-future
|
||||
python-intervaltree
|
||||
python-numpy
|
||||
python-pandas
|
||||
python-pybedtools
|
||||
python-pybigwig
|
||||
python-pytest
|
||||
python-msgpack-numpy
|
||||
python-cython
|
||||
python-msgpack
|
||||
python-pysam))
|
||||
(home-page "https://pypi.org/project/genomic-regions/")
|
||||
(synopsis "Consistently handle genomic regions")
|
||||
(description "This package aims to simplify working with genomic region /
|
||||
interval data by providing a common interface that lets you access a wide
|
||||
selection of file types and formats for handling genomic region data---all
|
||||
using the same syntax.")
|
||||
(license license:expat)))
|
||||
|
||||
(define-public python-loompy
|
||||
(package
|
||||
(name "python-loompy")
|
||||
|
|
Loading…
Reference in a new issue