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gnu: Add r-reactomepa.

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* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
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Ricardo Wurmus 2019-12-18 15:24:21 +01:00
parent c373223e63
commit f388834e11
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gnu/packages/bioconductor.scm
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@ -7038,3 +7038,33 @@ (define-public r-graphite
and automates the conversion of node identifiers (e.g. from Entrez IDs to gene
symbols).")
(license license:agpl3+)))
(define-public r-reactomepa
(package
(name "r-reactomepa")
(version "1.30.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ReactomePA" version))
(sha256
(base32
"1vwc9kj1l4yi7c4f4lnq0i3wl2nrmmhcxyakz8qak122fi92z3j1"))))
(properties `((upstream-name . "ReactomePA")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-dose" ,r-dose)
("r-enrichplot" ,r-enrichplot)
("r-ggplot2" ,r-ggplot2)
("r-ggraph" ,r-ggraph)
("r-graphite" ,r-graphite)
("r-igraph" ,r-igraph)
("r-reactome-db" ,r-reactome-db)))
(home-page "https://guangchuangyu.github.io/software/ReactomePA")
(synopsis "Reactome pathway analysis")
(description
"This package provides functions for pathway analysis based on the
REACTOME pathway database. It implements enrichment analysis, gene set
enrichment analysis and several functions for visualization.")
(license license:gpl2)))