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gnu: Add r-reactomepa.
* gnu/packages/bioconductor.scm (r-reactomepa): New variable.
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@ -7038,3 +7038,33 @@ (define-public r-graphite
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and automates the conversion of node identifiers (e.g. from Entrez IDs to gene
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and automates the conversion of node identifiers (e.g. from Entrez IDs to gene
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symbols).")
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symbols).")
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(license license:agpl3+)))
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(license license:agpl3+)))
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(define-public r-reactomepa
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(package
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(name "r-reactomepa")
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(version "1.30.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "ReactomePA" version))
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(sha256
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(base32
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"1vwc9kj1l4yi7c4f4lnq0i3wl2nrmmhcxyakz8qak122fi92z3j1"))))
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(properties `((upstream-name . "ReactomePA")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-dose" ,r-dose)
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("r-enrichplot" ,r-enrichplot)
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("r-ggplot2" ,r-ggplot2)
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("r-ggraph" ,r-ggraph)
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("r-graphite" ,r-graphite)
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("r-igraph" ,r-igraph)
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("r-reactome-db" ,r-reactome-db)))
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(home-page "https://guangchuangyu.github.io/software/ReactomePA")
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(synopsis "Reactome pathway analysis")
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(description
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"This package provides functions for pathway analysis based on the
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REACTOME pathway database. It implements enrichment analysis, gene set
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enrichment analysis and several functions for visualization.")
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(license license:gpl2)))
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