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gnu: Add r-glimma.

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* gnu/packages/bioconductor.scm (r-glimma): New variable.
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Ricardo Wurmus 2018-07-04 17:45:08 +02:00 committed by Ricardo Wurmus
parent 5da0e14285
commit f4235c0eca
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1 changed files with 29 additions and 1 deletions
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30
gnu/packages/bioconductor.scm
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@ -28,7 +28,8 @@ (define-module (gnu packages bioconductor)
#:use-module (gnu packages cran)
#:use-module (gnu packages compression)
#:use-module (gnu packages graph)
#:use-module (gnu packages statistics))
#:use-module (gnu packages statistics)
#:use-module (gnu packages web))
(define-public r-bsgenome-dmelanogaster-ucsc-dm6
(package
@ -750,3 +751,30 @@ (define-public r-goseq
"This package provides tools to detect Gene Ontology and/or other user
defined categories which are over/under represented in RNA-seq data.")
(license license:lgpl2.0+)))
(define-public r-glimma
(package
(name "r-glimma")
(version "1.8.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Glimma" version))
(sha256
(base32
"0kfia60vrlys6amdchdix01iwbkwyb7nfjqn5hczsxp8rhmbg25s"))))
(properties `((upstream-name . "Glimma")))
(build-system r-build-system)
(propagated-inputs
`(("r-edger" ,r-edger)
("r-jsonlite" ,r-jsonlite)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://github.com/Shians/Glimma")
(synopsis "Interactive HTML graphics")
(description
"This package generates interactive visualisations for analysis of
RNA-sequencing data using output from limma, edgeR or DESeq2 packages in an
HTML page. The interactions are built on top of the popular static
representations of analysis results in order to provide additional
information.")
(license license:lgpl3)))